Gene : Seita.2G409800 S. italica v2.2
Defline:  (1 of 1) PTHR13048 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 Genomic Order:  4098
Name:  ? Seita.2G409800 Secondary Identifier:  ? PAC:32720626
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G409800 0.5kb upstream 0.5kb upstream 3589 true scaffold_2: 46871401-46874989 Setaria italica
Seita.2G409800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46871401-46871900 Setaria italica
Seita.2G409800 0.5kb downstream 0.5kb downstream 3589 true scaffold_2: 46871901-46875489 Setaria italica
Seita.2G409800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46874990-46875489 Setaria italica
Seita.2G409800 1.0kb upstream 1.0kb upstream 4089 true scaffold_2: 46870901-46874989 Setaria italica
Seita.2G409800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46870901-46871900 Setaria italica
Seita.2G409800 1.0kb downstream 1.0kb downstream 4089 true scaffold_2: 46871901-46875989 Setaria italica
Seita.2G409800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46874990-46875989 Setaria italica
Seita.2G409800 2.0kb upstream 2.0kb upstream 5089 true scaffold_2: 46869901-46874989 Setaria italica
Seita.2G409800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46869901-46871900 Setaria italica
Seita.2G409800 2.0kb downstream 2.0kb downstream 5089 true scaffold_2: 46871901-46876989 Setaria italica
Seita.2G409800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46874990-46876989 Setaria italica
Seita.2G409800 5.0kb upstream 5.0kb upstream 8089 true scaffold_2: 46866901-46874989 Setaria italica
Seita.2G409800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46866901-46871900 Setaria italica
Seita.2G409800 5.0kb downstream 5.0kb downstream 8089 true scaffold_2: 46871901-46879989 Setaria italica
Seita.2G409800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46874990-46879989 Setaria italica
Seita.2G409800 10.0kb upstream 10.0kb upstream 13089 true scaffold_2: 46861901-46874989 Setaria italica
Seita.2G409800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46861901-46871900 Setaria italica
Seita.2G409800 10.0kb downstream 10.0kb downstream 13089 true scaffold_2: 46871901-46884989 Setaria italica
Seita.2G409800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46874990-46884989 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176441 5267 Panicoideae View MSA
124584917 5269 Grass View MSA
122046284 5273 Angiosperm View MSA
121345634 5274 Embryophyte View MSA
123425946 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.747        
cufflinks 13.987     High High
cufflinks 6.154        
cufflinks 6.576        
cufflinks 5.226       Low
cufflinks 15.205     High High
cufflinks 7.408        
cufflinks 9.447        
cufflinks 6.758        
cufflinks 12.589       High
cufflinks 8.674        
cufflinks 9.421        
cufflinks 10.834        
cufflinks 8.212        
cufflinks 11.838        
cufflinks 4.913       Low
cufflinks 12.451       High
cufflinks 3.908       Low
cufflinks 6.727        
cufflinks 11.707        

0 Strain