Gene : Seita.2G412800 S. italica v2.2
Defline:  (1 of 1) PTHR13832:SF267 - PROTEIN PHOSPHATASE 1K, MITOCHONDRIAL Genomic Order:  4128
Name:  ? Seita.2G412800 Secondary Identifier:  ? PAC:32723094
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G412800 0.5kb upstream 0.5kb upstream 3929 true scaffold_2: 47053070-47056998 Setaria italica
Seita.2G412800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47056499-47056998 Setaria italica
Seita.2G412800 0.5kb downstream 0.5kb downstream 3929 true scaffold_2: 47052570-47056498 Setaria italica
Seita.2G412800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47052570-47053069 Setaria italica
Seita.2G412800 1.0kb upstream 1.0kb upstream 4429 true scaffold_2: 47053070-47057498 Setaria italica
Seita.2G412800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47056499-47057498 Setaria italica
Seita.2G412800 1.0kb downstream 1.0kb downstream 4429 true scaffold_2: 47052070-47056498 Setaria italica
Seita.2G412800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47052070-47053069 Setaria italica
Seita.2G412800 2.0kb upstream 2.0kb upstream 5429 true scaffold_2: 47053070-47058498 Setaria italica
Seita.2G412800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47056499-47058498 Setaria italica
Seita.2G412800 2.0kb downstream 2.0kb downstream 5429 true scaffold_2: 47051070-47056498 Setaria italica
Seita.2G412800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47051070-47053069 Setaria italica
Seita.2G412800 5.0kb upstream 5.0kb upstream 8429 true scaffold_2: 47053070-47061498 Setaria italica
Seita.2G412800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47056499-47061498 Setaria italica
Seita.2G412800 5.0kb downstream 5.0kb downstream 8429 true scaffold_2: 47048070-47056498 Setaria italica
Seita.2G412800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47048070-47053069 Setaria italica
Seita.2G412800 10.0kb upstream 10.0kb upstream 13429 true scaffold_2: 47053070-47066498 Setaria italica
Seita.2G412800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47056499-47066498 Setaria italica
Seita.2G412800 10.0kb downstream 10.0kb downstream 13429 true scaffold_2: 47043070-47056498 Setaria italica
Seita.2G412800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47043070-47053069 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177540 5267 Panicoideae View MSA
124589586 5269 Grass View MSA
122046531 5273 Angiosperm View MSA
121348551 5274 Embryophyte View MSA
123426661 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.951        
cufflinks 0.667        
cufflinks 0.662        
cufflinks 0.647        
cufflinks 0.555        
cufflinks 0.772        
cufflinks 0.587        
cufflinks 0.659        
cufflinks 0.42       Low
cufflinks 1.25        
cufflinks 0.802        
cufflinks 1.52       High
cufflinks 1.523       High
cufflinks 0.829        
cufflinks 1.455       High
cufflinks 0.529       Low
cufflinks 2.027       High
cufflinks 0.637        
cufflinks 0.789        
cufflinks 1.666       High

0 Strain