Gene : Seita.2G411600 S. italica v2.2
Defline:  (1 of 1) KOG2291 - Oligosaccharyltransferase, alpha subunit (ribophorin I) Genomic Order:  4116
Name:  ? Seita.2G411600 Secondary Identifier:  ? PAC:32720688
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G411600 0.5kb upstream 0.5kb upstream 4628 true scaffold_2: 46967304-46971931 Setaria italica
Seita.2G411600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46967304-46967803 Setaria italica
Seita.2G411600 0.5kb downstream 0.5kb downstream 4628 true scaffold_2: 46967804-46972431 Setaria italica
Seita.2G411600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46971932-46972431 Setaria italica
Seita.2G411600 1.0kb upstream 1.0kb upstream 5128 true scaffold_2: 46966804-46971931 Setaria italica
Seita.2G411600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46966804-46967803 Setaria italica
Seita.2G411600 1.0kb downstream 1.0kb downstream 5128 true scaffold_2: 46967804-46972931 Setaria italica
Seita.2G411600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46971932-46972931 Setaria italica
Seita.2G411600 2.0kb upstream 2.0kb upstream 6128 true scaffold_2: 46965804-46971931 Setaria italica
Seita.2G411600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46965804-46967803 Setaria italica
Seita.2G411600 2.0kb downstream 2.0kb downstream 6128 true scaffold_2: 46967804-46973931 Setaria italica
Seita.2G411600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46971932-46973931 Setaria italica
Seita.2G411600 5.0kb upstream 5.0kb upstream 9128 true scaffold_2: 46962804-46971931 Setaria italica
Seita.2G411600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46962804-46967803 Setaria italica
Seita.2G411600 5.0kb downstream 5.0kb downstream 9128 true scaffold_2: 46967804-46976931 Setaria italica
Seita.2G411600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46971932-46976931 Setaria italica
Seita.2G411600 10.0kb upstream 10.0kb upstream 14128 true scaffold_2: 46957804-46971931 Setaria italica
Seita.2G411600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46957804-46967803 Setaria italica
Seita.2G411600 10.0kb downstream 10.0kb downstream 14128 true scaffold_2: 46967804-46981931 Setaria italica
Seita.2G411600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46971932-46981931 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180910 5267 Panicoideae View MSA
124581029 5269 Grass View MSA
122045839 5273 Angiosperm View MSA
121344517 5274 Embryophyte View MSA
123425585 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.614     High  
cufflinks 30.466     High  
cufflinks 27.42     High  
cufflinks 24.171     High  
cufflinks 20.587     High Low
cufflinks 31.034     High  
cufflinks 23.971     High  
cufflinks 22.96     High  
cufflinks 20.695     High Low
cufflinks 26.602     High  
cufflinks 30.255     High  
cufflinks 28.564     High  
cufflinks 27.268     High  
cufflinks 28.468     High  
cufflinks 35.627     High High
cufflinks 19.068     High Low
cufflinks 34.062     High High
cufflinks 21.162     High Low
cufflinks 24.182     High  
cufflinks 32.947     High High

0 Strain