Gene : Seita.2G412100 S. italica v2.2
Defline:  (1 of 1) PTHR11139:SF1 - TRANSFORMATION/TRANSCRIPTION DOMAIN-ASSOCIATED PROTEIN Genomic Order:  4121
Name:  ? Seita.2G412100 Secondary Identifier:  ? PAC:32718297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G412100 0.5kb upstream 0.5kb upstream 21971 true scaffold_2: 46997663-47019633 Setaria italica
Seita.2G412100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47019134-47019633 Setaria italica
Seita.2G412100 0.5kb downstream 0.5kb downstream 21971 true scaffold_2: 46997163-47019133 Setaria italica
Seita.2G412100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46997163-46997662 Setaria italica
Seita.2G412100 1.0kb upstream 1.0kb upstream 22471 true scaffold_2: 46997663-47020133 Setaria italica
Seita.2G412100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47019134-47020133 Setaria italica
Seita.2G412100 1.0kb downstream 1.0kb downstream 22471 true scaffold_2: 46996663-47019133 Setaria italica
Seita.2G412100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46996663-46997662 Setaria italica
Seita.2G412100 2.0kb upstream 2.0kb upstream 23471 true scaffold_2: 46997663-47021133 Setaria italica
Seita.2G412100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47019134-47021133 Setaria italica
Seita.2G412100 2.0kb downstream 2.0kb downstream 23471 true scaffold_2: 46995663-47019133 Setaria italica
Seita.2G412100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46995663-46997662 Setaria italica
Seita.2G412100 5.0kb upstream 5.0kb upstream 26471 true scaffold_2: 46997663-47024133 Setaria italica
Seita.2G412100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47019134-47024133 Setaria italica
Seita.2G412100 5.0kb downstream 5.0kb downstream 26471 true scaffold_2: 46992663-47019133 Setaria italica
Seita.2G412100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46992663-46997662 Setaria italica
Seita.2G412100 10.0kb upstream 10.0kb upstream 31471 true scaffold_2: 46997663-47029133 Setaria italica
Seita.2G412100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47019134-47029133 Setaria italica
Seita.2G412100 10.0kb downstream 10.0kb downstream 31471 true scaffold_2: 46987663-47019133 Setaria italica
Seita.2G412100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46987663-46997662 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027431 5273 Angiosperm View MSA
122178433 5267 Panicoideae View MSA
124581749 5269 Grass View MSA
121344769 5274 Embryophyte View MSA
123424018 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.79     High High
cufflinks 27.952     High High
cufflinks 22.354     High  
cufflinks 14.488     High  
cufflinks 11.73     High Low
cufflinks 28.212     High High
cufflinks 21.339     High  
cufflinks 11.527       Low
cufflinks 15.102     High  
cufflinks 11.853       Low
cufflinks 21.373     High  
cufflinks 16.367     High  
cufflinks 17.95     High  
cufflinks 20.812     High  
cufflinks 21.485     High  
cufflinks 28.55     High High
cufflinks 12.29       Low
cufflinks 38.981     High High
cufflinks 11.413     High Low
cufflinks 16.038     High  

0 Strain