Gene : Seita.2G414700 S. italica v2.2
Defline:  (1 of 2) PTHR13377//PTHR13377:SF4 - PLACENTAL PROTEIN 6 Genomic Order:  4147
Name:  ? Seita.2G414700 Secondary Identifier:  ? PAC:32718996
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G414700 0.5kb upstream 0.5kb upstream 4253 true scaffold_2: 47153190-47157442 Setaria italica
Seita.2G414700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47156943-47157442 Setaria italica
Seita.2G414700 0.5kb downstream 0.5kb downstream 4253 true scaffold_2: 47152690-47156942 Setaria italica
Seita.2G414700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47152690-47153189 Setaria italica
Seita.2G414700 1.0kb upstream 1.0kb upstream 4753 true scaffold_2: 47153190-47157942 Setaria italica
Seita.2G414700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47156943-47157942 Setaria italica
Seita.2G414700 1.0kb downstream 1.0kb downstream 4753 true scaffold_2: 47152190-47156942 Setaria italica
Seita.2G414700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47152190-47153189 Setaria italica
Seita.2G414700 2.0kb upstream 2.0kb upstream 5753 true scaffold_2: 47153190-47158942 Setaria italica
Seita.2G414700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47156943-47158942 Setaria italica
Seita.2G414700 2.0kb downstream 2.0kb downstream 5753 true scaffold_2: 47151190-47156942 Setaria italica
Seita.2G414700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47151190-47153189 Setaria italica
Seita.2G414700 5.0kb upstream 5.0kb upstream 8753 true scaffold_2: 47153190-47161942 Setaria italica
Seita.2G414700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47156943-47161942 Setaria italica
Seita.2G414700 5.0kb downstream 5.0kb downstream 8753 true scaffold_2: 47148190-47156942 Setaria italica
Seita.2G414700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47148190-47153189 Setaria italica
Seita.2G414700 10.0kb upstream 10.0kb upstream 13753 true scaffold_2: 47153190-47166942 Setaria italica
Seita.2G414700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47156943-47166942 Setaria italica
Seita.2G414700 10.0kb downstream 10.0kb downstream 13753 true scaffold_2: 47143190-47156942 Setaria italica
Seita.2G414700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47143190-47153189 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175648 5267 Panicoideae View MSA
124574534 5269 Grass View MSA
122043069 5273 Angiosperm View MSA
121350097 5274 Embryophyte View MSA
123424498 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.249        
cufflinks 15.925     High High
cufflinks 2.844       Low
cufflinks 2.515       Low
cufflinks 2.453       Low
cufflinks 13.116       High
cufflinks 7.04        
cufflinks 8.907        
cufflinks 5.96        
cufflinks 8.989        
cufflinks 10.673        
cufflinks 8.229        
cufflinks 7.436        
cufflinks 3.605        
cufflinks 11.863       High
cufflinks 4.533        
cufflinks 8.426        
cufflinks 3.468       Low
cufflinks 3.215       Low
cufflinks 10.419        

0 Strain