Gene : Seita.2G414300 S. italica v2.2
Defline:  (1 of 4) KOG3140 - Predicted membrane protein Genomic Order:  4143
Name:  ? Seita.2G414300 Secondary Identifier:  ? PAC:32721774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G414300 0.5kb upstream 0.5kb upstream 6088 true scaffold_2: 47122523-47128610 Setaria italica
Seita.2G414300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47128111-47128610 Setaria italica
Seita.2G414300 0.5kb downstream 0.5kb downstream 6088 true scaffold_2: 47122023-47128110 Setaria italica
Seita.2G414300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47122023-47122522 Setaria italica
Seita.2G414300 1.0kb upstream 1.0kb upstream 6588 true scaffold_2: 47122523-47129110 Setaria italica
Seita.2G414300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47128111-47129110 Setaria italica
Seita.2G414300 1.0kb downstream 1.0kb downstream 6588 true scaffold_2: 47121523-47128110 Setaria italica
Seita.2G414300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47121523-47122522 Setaria italica
Seita.2G414300 2.0kb upstream 2.0kb upstream 7588 true scaffold_2: 47122523-47130110 Setaria italica
Seita.2G414300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47128111-47130110 Setaria italica
Seita.2G414300 2.0kb downstream 2.0kb downstream 7588 true scaffold_2: 47120523-47128110 Setaria italica
Seita.2G414300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47120523-47122522 Setaria italica
Seita.2G414300 5.0kb upstream 5.0kb upstream 10588 true scaffold_2: 47122523-47133110 Setaria italica
Seita.2G414300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47128111-47133110 Setaria italica
Seita.2G414300 5.0kb downstream 5.0kb downstream 10588 true scaffold_2: 47117523-47128110 Setaria italica
Seita.2G414300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47117523-47122522 Setaria italica
Seita.2G414300 10.0kb upstream 10.0kb upstream 15588 true scaffold_2: 47122523-47138110 Setaria italica
Seita.2G414300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47128111-47138110 Setaria italica
Seita.2G414300 10.0kb downstream 10.0kb downstream 15588 true scaffold_2: 47112523-47128110 Setaria italica
Seita.2G414300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47112523-47122522 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176610 5267 Panicoideae View MSA
124574353 5269 Grass View MSA
122051271 5273 Angiosperm View MSA
121349848 5274 Embryophyte View MSA
123428145 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.709        
cufflinks 9.202        
cufflinks 6.685        
cufflinks 7.691        
cufflinks 6.492        
cufflinks 10.602        
cufflinks 6.023       Low
cufflinks 9.752        
cufflinks 6.775        
cufflinks 13.576       High
cufflinks 9.324        
cufflinks 10.365        
cufflinks 12.975       High
cufflinks 7.622        
cufflinks 10.846        
cufflinks 4.64       Low
cufflinks 11.845       High
cufflinks 5.492       Low
cufflinks 5.746       Low
cufflinks 11.599       High

0 Strain