Gene : Seita.2G417900 S. italica v2.2
Defline:  (1 of 2) PTHR21141:SF3 - 60S ACIDIC RIBOSOMAL PROTEIN P0 Genomic Order:  4179
Name:  ? Seita.2G417900 Secondary Identifier:  ? PAC:32721432
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G417900 0.5kb upstream 0.5kb upstream 2992 true scaffold_2: 47323262-47326253 Setaria italica
Seita.2G417900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47323262-47323761 Setaria italica
Seita.2G417900 0.5kb downstream 0.5kb downstream 2992 true scaffold_2: 47323762-47326753 Setaria italica
Seita.2G417900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47326254-47326753 Setaria italica
Seita.2G417900 1.0kb upstream 1.0kb upstream 3492 true scaffold_2: 47322762-47326253 Setaria italica
Seita.2G417900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47322762-47323761 Setaria italica
Seita.2G417900 1.0kb downstream 1.0kb downstream 3492 true scaffold_2: 47323762-47327253 Setaria italica
Seita.2G417900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47326254-47327253 Setaria italica
Seita.2G417900 2.0kb upstream 2.0kb upstream 4492 true scaffold_2: 47321762-47326253 Setaria italica
Seita.2G417900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47321762-47323761 Setaria italica
Seita.2G417900 2.0kb downstream 2.0kb downstream 4492 true scaffold_2: 47323762-47328253 Setaria italica
Seita.2G417900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47326254-47328253 Setaria italica
Seita.2G417900 5.0kb upstream 5.0kb upstream 7492 true scaffold_2: 47318762-47326253 Setaria italica
Seita.2G417900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47318762-47323761 Setaria italica
Seita.2G417900 5.0kb downstream 5.0kb downstream 7492 true scaffold_2: 47323762-47331253 Setaria italica
Seita.2G417900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47326254-47331253 Setaria italica
Seita.2G417900 10.0kb upstream 10.0kb upstream 12492 true scaffold_2: 47313762-47326253 Setaria italica
Seita.2G417900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47313762-47323761 Setaria italica
Seita.2G417900 10.0kb downstream 10.0kb downstream 12492 true scaffold_2: 47323762-47336253 Setaria italica
Seita.2G417900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47326254-47336253 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122116047 5267 Panicoideae View MSA
124582376 5269 Grass View MSA
122042027 5273 Angiosperm View MSA
121345246 5274 Embryophyte View MSA
123428323 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 89.507     High  
cufflinks 128.43     High  
cufflinks 40.1     High Low
cufflinks 33.395     High Low
cufflinks 66.178     High  
cufflinks 154.001     High  
cufflinks 103.433     High  
cufflinks 163.87     High  
cufflinks 280.67     High High
cufflinks 153.296     High  
cufflinks 117.531     High  
cufflinks 114.533     High  
cufflinks 113.506     High  
cufflinks 66.522     High  
cufflinks 128.838     High  
cufflinks 34.264     High Low
cufflinks 176.727     High  
cufflinks 25.965     High Low
cufflinks 50.397     High  
cufflinks 200.493     High High

0 Strain