Gene : Seita.2G415600 S. italica v2.2
Defline:  (1 of 3) PF03350 - Uncharacterized protein family, UPF0114 (UPF0114) Genomic Order:  4156
Name:  ? Seita.2G415600 Secondary Identifier:  ? PAC:32722661
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G415600 0.5kb upstream 0.5kb upstream 3261 true scaffold_2: 47202264-47205524 Setaria italica
Seita.2G415600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47202264-47202763 Setaria italica
Seita.2G415600 0.5kb downstream 0.5kb downstream 3261 true scaffold_2: 47202764-47206024 Setaria italica
Seita.2G415600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47205525-47206024 Setaria italica
Seita.2G415600 1.0kb upstream 1.0kb upstream 3761 true scaffold_2: 47201764-47205524 Setaria italica
Seita.2G415600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47201764-47202763 Setaria italica
Seita.2G415600 1.0kb downstream 1.0kb downstream 3761 true scaffold_2: 47202764-47206524 Setaria italica
Seita.2G415600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47205525-47206524 Setaria italica
Seita.2G415600 2.0kb upstream 2.0kb upstream 4761 true scaffold_2: 47200764-47205524 Setaria italica
Seita.2G415600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47200764-47202763 Setaria italica
Seita.2G415600 2.0kb downstream 2.0kb downstream 4761 true scaffold_2: 47202764-47207524 Setaria italica
Seita.2G415600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47205525-47207524 Setaria italica
Seita.2G415600 5.0kb upstream 5.0kb upstream 7761 true scaffold_2: 47197764-47205524 Setaria italica
Seita.2G415600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47197764-47202763 Setaria italica
Seita.2G415600 5.0kb downstream 5.0kb downstream 7761 true scaffold_2: 47202764-47210524 Setaria italica
Seita.2G415600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47205525-47210524 Setaria italica
Seita.2G415600 10.0kb upstream 10.0kb upstream 12761 true scaffold_2: 47192764-47205524 Setaria italica
Seita.2G415600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47192764-47202763 Setaria italica
Seita.2G415600 10.0kb downstream 10.0kb downstream 12761 true scaffold_2: 47202764-47215524 Setaria italica
Seita.2G415600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47205525-47215524 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197499 5267 Panicoideae View MSA
124577291 5269 Grass View MSA
122048009 5273 Angiosperm View MSA
121348495 5274 Embryophyte View MSA
123426050 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.093        
cufflinks 17.167     High  
cufflinks 34.339     High  
cufflinks 24.92     High  
cufflinks 30.732     High  
cufflinks 15.014     High  
cufflinks 37.614     High  
cufflinks 45.862     High  
cufflinks 33.13     High  
cufflinks 10.096        
cufflinks 7.373        
cufflinks 0.333       Low
cufflinks 1.173        
cufflinks 45.727     High  
cufflinks 0.153       Low
cufflinks 44.445     High  
cufflinks 0.367       Low
cufflinks 1.912        
cufflinks 102.588     High High
cufflinks 0.432       Low

0 Strain