Gene : Seita.2G419600 S. italica v2.2
Defline:  (1 of 1) PTHR10799:SF70 - CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 Genomic Order:  4196
Name:  ? Seita.2G419600 Secondary Identifier:  ? PAC:32723293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G419600 0.5kb upstream 0.5kb upstream 18163 true scaffold_2: 47454565-47472727 Setaria italica
Seita.2G419600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47472228-47472727 Setaria italica
Seita.2G419600 0.5kb downstream 0.5kb downstream 18163 true scaffold_2: 47454065-47472227 Setaria italica
Seita.2G419600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47454065-47454564 Setaria italica
Seita.2G419600 1.0kb upstream 1.0kb upstream 18663 true scaffold_2: 47454565-47473227 Setaria italica
Seita.2G419600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47472228-47473227 Setaria italica
Seita.2G419600 1.0kb downstream 1.0kb downstream 18663 true scaffold_2: 47453565-47472227 Setaria italica
Seita.2G419600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47453565-47454564 Setaria italica
Seita.2G419600 2.0kb upstream 2.0kb upstream 19663 true scaffold_2: 47454565-47474227 Setaria italica
Seita.2G419600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47472228-47474227 Setaria italica
Seita.2G419600 2.0kb downstream 2.0kb downstream 19663 true scaffold_2: 47452565-47472227 Setaria italica
Seita.2G419600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47452565-47454564 Setaria italica
Seita.2G419600 5.0kb upstream 5.0kb upstream 22663 true scaffold_2: 47454565-47477227 Setaria italica
Seita.2G419600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47472228-47477227 Setaria italica
Seita.2G419600 5.0kb downstream 5.0kb downstream 22663 true scaffold_2: 47449565-47472227 Setaria italica
Seita.2G419600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47449565-47454564 Setaria italica
Seita.2G419600 10.0kb upstream 10.0kb upstream 27663 true scaffold_2: 47454565-47482227 Setaria italica
Seita.2G419600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47472228-47482227 Setaria italica
Seita.2G419600 10.0kb downstream 10.0kb downstream 27663 true scaffold_2: 47444565-47472227 Setaria italica
Seita.2G419600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47444565-47454564 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196381 5267 Panicoideae View MSA
124582069 5269 Grass View MSA
122051163 5273 Angiosperm View MSA
121347605 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.267       High
cufflinks 3.644        
cufflinks 4.642        
cufflinks 3.936        
cufflinks 3.251        
cufflinks 3.596        
cufflinks 3.698        
cufflinks 2.579       Low
cufflinks 2.973        
cufflinks 1.592       Low
cufflinks 3.932        
cufflinks 3.217        
cufflinks 3.291        
cufflinks 3.718        
cufflinks 3.858        
cufflinks 4.673       High
cufflinks 2.731        
cufflinks 6.119       High
cufflinks 2.811        
cufflinks 2.713        

0 Strain