Gene : Seita.2G421200 S. italica v2.2
Defline:  (1 of 2) PTHR10894:SF0 - NUCLEOLAR PROTEIN 56 Genomic Order:  4212
Name:  ? Seita.2G421200 Secondary Identifier:  ? PAC:32721905
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G421200 0.5kb upstream 0.5kb upstream 4164 true scaffold_2: 47563081-47567244 Setaria italica
Seita.2G421200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47563081-47563580 Setaria italica
Seita.2G421200 0.5kb downstream 0.5kb downstream 4164 true scaffold_2: 47563581-47567744 Setaria italica
Seita.2G421200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47567245-47567744 Setaria italica
Seita.2G421200 1.0kb upstream 1.0kb upstream 4664 true scaffold_2: 47562581-47567244 Setaria italica
Seita.2G421200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47562581-47563580 Setaria italica
Seita.2G421200 1.0kb downstream 1.0kb downstream 4664 true scaffold_2: 47563581-47568244 Setaria italica
Seita.2G421200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47567245-47568244 Setaria italica
Seita.2G421200 2.0kb upstream 2.0kb upstream 5664 true scaffold_2: 47561581-47567244 Setaria italica
Seita.2G421200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47561581-47563580 Setaria italica
Seita.2G421200 2.0kb downstream 2.0kb downstream 5664 true scaffold_2: 47563581-47569244 Setaria italica
Seita.2G421200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47567245-47569244 Setaria italica
Seita.2G421200 5.0kb upstream 5.0kb upstream 8664 true scaffold_2: 47558581-47567244 Setaria italica
Seita.2G421200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47558581-47563580 Setaria italica
Seita.2G421200 5.0kb downstream 5.0kb downstream 8664 true scaffold_2: 47563581-47572244 Setaria italica
Seita.2G421200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47567245-47572244 Setaria italica
Seita.2G421200 10.0kb upstream 10.0kb upstream 13664 true scaffold_2: 47553581-47567244 Setaria italica
Seita.2G421200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47553581-47563580 Setaria italica
Seita.2G421200 10.0kb downstream 10.0kb downstream 13664 true scaffold_2: 47563581-47577244 Setaria italica
Seita.2G421200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47567245-47577244 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181657 5267 Panicoideae View MSA
124589600 5269 Grass View MSA
122042292 5273 Angiosperm View MSA
121349540 5274 Embryophyte View MSA
123424801 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.604     High  
cufflinks 34.787     High  
cufflinks 21.801     High  
cufflinks 18.853     High  
cufflinks 15.459     High  
cufflinks 38.906     High High
cufflinks 24.469     High  
cufflinks 16.344     High  
cufflinks 17.889     High  
cufflinks 6.536       Low
cufflinks 18.014     High  
cufflinks 30.675     High  
cufflinks 25.148     High  
cufflinks 18.42     High  
cufflinks 25.231     High  
cufflinks 40.558     High High
cufflinks 26.268     High  
cufflinks 43.177     High High
cufflinks 14.922     High  
cufflinks 23.715     High  

0 Strain