Gene : Seita.2G427500 S. italica v2.2
Defline:  (1 of 1) PTHR11702:SF20 - GTP-BINDING PROTEIN OBGC, CHLOROPLASTIC Genomic Order:  4275
Name:  ? Seita.2G427500 Secondary Identifier:  ? PAC:32721170
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G427500 0.5kb upstream 0.5kb upstream 4649 true scaffold_2: 47970351-47974999 Setaria italica
Seita.2G427500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47974500-47974999 Setaria italica
Seita.2G427500 0.5kb downstream 0.5kb downstream 4649 true scaffold_2: 47969851-47974499 Setaria italica
Seita.2G427500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47969851-47970350 Setaria italica
Seita.2G427500 1.0kb upstream 1.0kb upstream 5149 true scaffold_2: 47970351-47975499 Setaria italica
Seita.2G427500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47974500-47975499 Setaria italica
Seita.2G427500 1.0kb downstream 1.0kb downstream 5149 true scaffold_2: 47969351-47974499 Setaria italica
Seita.2G427500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47969351-47970350 Setaria italica
Seita.2G427500 2.0kb upstream 2.0kb upstream 6149 true scaffold_2: 47970351-47976499 Setaria italica
Seita.2G427500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47974500-47976499 Setaria italica
Seita.2G427500 2.0kb downstream 2.0kb downstream 6149 true scaffold_2: 47968351-47974499 Setaria italica
Seita.2G427500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47968351-47970350 Setaria italica
Seita.2G427500 5.0kb upstream 5.0kb upstream 9149 true scaffold_2: 47970351-47979499 Setaria italica
Seita.2G427500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47974500-47979499 Setaria italica
Seita.2G427500 5.0kb downstream 5.0kb downstream 9149 true scaffold_2: 47965351-47974499 Setaria italica
Seita.2G427500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47965351-47970350 Setaria italica
Seita.2G427500 10.0kb upstream 10.0kb upstream 14149 true scaffold_2: 47970351-47984499 Setaria italica
Seita.2G427500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47974500-47984499 Setaria italica
Seita.2G427500 10.0kb downstream 10.0kb downstream 14149 true scaffold_2: 47960351-47974499 Setaria italica
Seita.2G427500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47960351-47970350 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041071 5273 Angiosperm View MSA
122189552 5267 Panicoideae View MSA
124576268 5269 Grass View MSA
121346272 5274 Embryophyte View MSA
123428506 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.122        
cufflinks 4.621        
cufflinks 5.469        
cufflinks 1.643        
cufflinks 8.951        
cufflinks 5.314        
cufflinks 11.904        
cufflinks 14.211     High High
cufflinks 28.733     High High
cufflinks 5.11        
cufflinks 7.419        
cufflinks 0.535       Low
cufflinks 0.79       Low
cufflinks 10.488        
cufflinks 1.418        
cufflinks 11.901        
cufflinks 1.36       Low
cufflinks 6.072        
cufflinks 1.46        
cufflinks 0.931       Low

0 Strain