Gene : Seita.2G429500 S. italica v2.2
Defline:  (1 of 2) PTHR10064 - 60S RIBOSOMAL PROTEIN L22 Genomic Order:  4295
Name:  ? Seita.2G429500 Secondary Identifier:  ? PAC:32719116
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G429500 0.5kb upstream 0.5kb upstream 1788 true scaffold_2: 48073129-48074916 Setaria italica
Seita.2G429500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48073129-48073628 Setaria italica
Seita.2G429500 0.5kb downstream 0.5kb downstream 1788 true scaffold_2: 48073629-48075416 Setaria italica
Seita.2G429500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48074917-48075416 Setaria italica
Seita.2G429500 1.0kb upstream 1.0kb upstream 2288 true scaffold_2: 48072629-48074916 Setaria italica
Seita.2G429500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48072629-48073628 Setaria italica
Seita.2G429500 1.0kb downstream 1.0kb downstream 2288 true scaffold_2: 48073629-48075916 Setaria italica
Seita.2G429500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48074917-48075916 Setaria italica
Seita.2G429500 2.0kb upstream 2.0kb upstream 3288 true scaffold_2: 48071629-48074916 Setaria italica
Seita.2G429500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48071629-48073628 Setaria italica
Seita.2G429500 2.0kb downstream 2.0kb downstream 3288 true scaffold_2: 48073629-48076916 Setaria italica
Seita.2G429500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48074917-48076916 Setaria italica
Seita.2G429500 5.0kb upstream 5.0kb upstream 6288 true scaffold_2: 48068629-48074916 Setaria italica
Seita.2G429500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48068629-48073628 Setaria italica
Seita.2G429500 5.0kb downstream 5.0kb downstream 6288 true scaffold_2: 48073629-48079916 Setaria italica
Seita.2G429500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48074917-48079916 Setaria italica
Seita.2G429500 10.0kb upstream 10.0kb upstream 11288 true scaffold_2: 48063629-48074916 Setaria italica
Seita.2G429500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48063629-48073628 Setaria italica
Seita.2G429500 10.0kb downstream 10.0kb downstream 11288 true scaffold_2: 48073629-48084916 Setaria italica
Seita.2G429500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48074917-48084916 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180123 5267 Panicoideae View MSA
124586510 5269 Grass View MSA
122045649 5273 Angiosperm View MSA
121348582 5274 Embryophyte View MSA
123423882 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.366     High  
cufflinks 69.945     High  
cufflinks 12.707     High Low
cufflinks 12.101     High Low
cufflinks 18.905     High  
cufflinks 67.681     High  
cufflinks 41.476     High  
cufflinks 89.299     High High
cufflinks 98.57     High High
cufflinks 112.238     High High
cufflinks 55.978     High  
cufflinks 46.973     High  
cufflinks 50.609     High  
cufflinks 29.212     High  
cufflinks 56.787     High  
cufflinks 17.886     High Low
cufflinks 83.704     High  
cufflinks 9.527       Low
cufflinks 18.365     High Low
cufflinks 87.058     High High

0 Strain