Gene : Seita.2G429600 S. italica v2.2
Defline:  (1 of 5) PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  4296
Name:  ? Seita.2G429600 Secondary Identifier:  ? PAC:32722771
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G429600 0.5kb upstream 0.5kb upstream 4528 true scaffold_2: 48075602-48080129 Setaria italica
Seita.2G429600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48079630-48080129 Setaria italica
Seita.2G429600 0.5kb downstream 0.5kb downstream 4528 true scaffold_2: 48075102-48079629 Setaria italica
Seita.2G429600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48075102-48075601 Setaria italica
Seita.2G429600 1.0kb upstream 1.0kb upstream 5028 true scaffold_2: 48075602-48080629 Setaria italica
Seita.2G429600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48079630-48080629 Setaria italica
Seita.2G429600 1.0kb downstream 1.0kb downstream 5028 true scaffold_2: 48074602-48079629 Setaria italica
Seita.2G429600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48074602-48075601 Setaria italica
Seita.2G429600 2.0kb upstream 2.0kb upstream 6028 true scaffold_2: 48075602-48081629 Setaria italica
Seita.2G429600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48079630-48081629 Setaria italica
Seita.2G429600 2.0kb downstream 2.0kb downstream 6028 true scaffold_2: 48073602-48079629 Setaria italica
Seita.2G429600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48073602-48075601 Setaria italica
Seita.2G429600 5.0kb upstream 5.0kb upstream 9028 true scaffold_2: 48075602-48084629 Setaria italica
Seita.2G429600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48079630-48084629 Setaria italica
Seita.2G429600 5.0kb downstream 5.0kb downstream 9028 true scaffold_2: 48070602-48079629 Setaria italica
Seita.2G429600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48070602-48075601 Setaria italica
Seita.2G429600 10.0kb upstream 10.0kb upstream 14028 true scaffold_2: 48075602-48089629 Setaria italica
Seita.2G429600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48079630-48089629 Setaria italica
Seita.2G429600 10.0kb downstream 10.0kb downstream 14028 true scaffold_2: 48065602-48079629 Setaria italica
Seita.2G429600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48065602-48075601 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197140 5267 Panicoideae View MSA
124574738 5269 Grass View MSA
122041778 5273 Angiosperm View MSA
121309888 5274 Embryophyte View MSA
123347524 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.412        
cufflinks 0.792       High
cufflinks 0.3        
cufflinks 0.229       Low
cufflinks 0.175       Low
cufflinks 0.694       High
cufflinks 0.33        
cufflinks 0.517        
cufflinks 0.461        
cufflinks 0.29     Low  
cufflinks 0.35        
cufflinks 0.503        
cufflinks 0.313        
cufflinks 0.67       High
cufflinks 0.531        
cufflinks 0.368        
cufflinks 0.736       High
cufflinks 0.289        
cufflinks 0.15       Low
cufflinks 0.624        

0 Strain