Gene : Seita.2G430500 S. italica v2.2
Defline:  (1 of 1) PTHR10909:SF282 - ACYL-COA DEHYDROGENASE FAMILY MEMBER 11 Genomic Order:  4305
Name:  ? Seita.2G430500 Secondary Identifier:  ? PAC:32721617
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G430500 0.5kb upstream 0.5kb upstream 9230 true scaffold_2: 48138605-48147834 Setaria italica
Seita.2G430500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48138605-48139104 Setaria italica
Seita.2G430500 0.5kb downstream 0.5kb downstream 9230 true scaffold_2: 48139105-48148334 Setaria italica
Seita.2G430500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48147835-48148334 Setaria italica
Seita.2G430500 1.0kb upstream 1.0kb upstream 9730 true scaffold_2: 48138105-48147834 Setaria italica
Seita.2G430500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48138105-48139104 Setaria italica
Seita.2G430500 1.0kb downstream 1.0kb downstream 9730 true scaffold_2: 48139105-48148834 Setaria italica
Seita.2G430500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48147835-48148834 Setaria italica
Seita.2G430500 2.0kb upstream 2.0kb upstream 10730 true scaffold_2: 48137105-48147834 Setaria italica
Seita.2G430500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48137105-48139104 Setaria italica
Seita.2G430500 2.0kb downstream 2.0kb downstream 10730 true scaffold_2: 48139105-48149834 Setaria italica
Seita.2G430500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48147835-48149834 Setaria italica
Seita.2G430500 5.0kb upstream 5.0kb upstream 13730 true scaffold_2: 48134105-48147834 Setaria italica
Seita.2G430500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48134105-48139104 Setaria italica
Seita.2G430500 5.0kb downstream 5.0kb downstream 13730 true scaffold_2: 48139105-48152834 Setaria italica
Seita.2G430500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48147835-48152834 Setaria italica
Seita.2G430500 10.0kb upstream 10.0kb upstream 18730 true scaffold_2: 48129105-48147834 Setaria italica
Seita.2G430500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48129105-48139104 Setaria italica
Seita.2G430500 10.0kb downstream 10.0kb downstream 18730 true scaffold_2: 48139105-48157834 Setaria italica
Seita.2G430500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48147835-48157834 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181238 5267 Panicoideae View MSA
124576739 5269 Grass View MSA
122041962 5273 Angiosperm View MSA
121347351 5274 Embryophyte View MSA
123424098 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.558        
cufflinks 7.73        
cufflinks 14.466     High High
cufflinks 15.119     High High
cufflinks 11.545     High  
cufflinks 7.882        
cufflinks 6.341       Low
cufflinks 5.18       Low
cufflinks 7.591        
cufflinks 7.666        
cufflinks 11.156        
cufflinks 13.269        
cufflinks 14.652     High High
cufflinks 3.902       Low
cufflinks 12.099        
cufflinks 6.082       Low
cufflinks 13.725        
cufflinks 9.161        
cufflinks 10.737        
cufflinks 10.722        

0 Strain