Gene : Seita.3G058800 S. italica v2.2
Defline:  (1 of 1) PTHR14211 - GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2 Genomic Order:  588
Name:  ? Seita.3G058800 Secondary Identifier:  ? PAC:32711148
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G058800 0.5kb upstream 0.5kb upstream 4967 true scaffold_3: 3742501-3747467 Setaria italica
Seita.3G058800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3746968-3747467 Setaria italica
Seita.3G058800 0.5kb downstream 0.5kb downstream 4967 true scaffold_3: 3742001-3746967 Setaria italica
Seita.3G058800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3742001-3742500 Setaria italica
Seita.3G058800 1.0kb upstream 1.0kb upstream 5467 true scaffold_3: 3742501-3747967 Setaria italica
Seita.3G058800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3746968-3747967 Setaria italica
Seita.3G058800 1.0kb downstream 1.0kb downstream 5467 true scaffold_3: 3741501-3746967 Setaria italica
Seita.3G058800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3741501-3742500 Setaria italica
Seita.3G058800 2.0kb upstream 2.0kb upstream 6467 true scaffold_3: 3742501-3748967 Setaria italica
Seita.3G058800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3746968-3748967 Setaria italica
Seita.3G058800 2.0kb downstream 2.0kb downstream 6467 true scaffold_3: 3740501-3746967 Setaria italica
Seita.3G058800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3740501-3742500 Setaria italica
Seita.3G058800 5.0kb upstream 5.0kb upstream 9467 true scaffold_3: 3742501-3751967 Setaria italica
Seita.3G058800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3746968-3751967 Setaria italica
Seita.3G058800 5.0kb downstream 5.0kb downstream 9467 true scaffold_3: 3737501-3746967 Setaria italica
Seita.3G058800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3737501-3742500 Setaria italica
Seita.3G058800 10.0kb upstream 10.0kb upstream 14467 true scaffold_3: 3742501-3756967 Setaria italica
Seita.3G058800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3746968-3756967 Setaria italica
Seita.3G058800 10.0kb downstream 10.0kb downstream 14467 true scaffold_3: 3732501-3746967 Setaria italica
Seita.3G058800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3732501-3742500 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183464 5267 Panicoideae View MSA
124589591 5269 Grass View MSA
122046811 5273 Angiosperm View MSA
121347392 5274 Embryophyte View MSA
123425995 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.965     High High
cufflinks 15.283     High  
cufflinks 7.803       Low
cufflinks 8.189       Low
cufflinks 10.633     High  
cufflinks 17.69     High  
cufflinks 10.281        
cufflinks 16.591     High  
cufflinks 20.183     High High
cufflinks 10.784        
cufflinks 15.078     High  
cufflinks 17.744     High  
cufflinks 12.588        
cufflinks 9.462        
cufflinks 14.53     High  
cufflinks 12.78     High  
cufflinks 20.29     High High
cufflinks 15.236     High  
cufflinks 6.228       Low
cufflinks 15.502     High  

0 Strain