Gene : Seita.3G063000 S. italica v2.2
Defline:  (1 of 14) PTHR23430 - HISTONE H2A Genomic Order:  630
Name:  ? Seita.3G063000 Secondary Identifier:  ? PAC:32711451
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G063000 0.5kb upstream 0.5kb upstream 1437 true scaffold_3: 3995527-3996963 Setaria italica
Seita.3G063000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3996464-3996963 Setaria italica
Seita.3G063000 0.5kb downstream 0.5kb downstream 1437 true scaffold_3: 3995027-3996463 Setaria italica
Seita.3G063000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3995027-3995526 Setaria italica
Seita.3G063000 1.0kb upstream 1.0kb upstream 1937 true scaffold_3: 3995527-3997463 Setaria italica
Seita.3G063000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3996464-3997463 Setaria italica
Seita.3G063000 1.0kb downstream 1.0kb downstream 1937 true scaffold_3: 3994527-3996463 Setaria italica
Seita.3G063000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3994527-3995526 Setaria italica
Seita.3G063000 2.0kb upstream 2.0kb upstream 2937 true scaffold_3: 3995527-3998463 Setaria italica
Seita.3G063000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3996464-3998463 Setaria italica
Seita.3G063000 2.0kb downstream 2.0kb downstream 2937 true scaffold_3: 3993527-3996463 Setaria italica
Seita.3G063000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3993527-3995526 Setaria italica
Seita.3G063000 5.0kb upstream 5.0kb upstream 5937 true scaffold_3: 3995527-4001463 Setaria italica
Seita.3G063000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3996464-4001463 Setaria italica
Seita.3G063000 5.0kb downstream 5.0kb downstream 5937 true scaffold_3: 3990527-3996463 Setaria italica
Seita.3G063000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3990527-3995526 Setaria italica
Seita.3G063000 10.0kb upstream 10.0kb upstream 10937 true scaffold_3: 3995527-4006463 Setaria italica
Seita.3G063000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3996464-4006463 Setaria italica
Seita.3G063000 10.0kb downstream 10.0kb downstream 10937 true scaffold_3: 3985527-3996463 Setaria italica
Seita.3G063000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3985527-3995526 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193191 5267 Panicoideae View MSA
124589713 5269 Grass View MSA
122048599 5273 Angiosperm View MSA
121351397 5274 Embryophyte View MSA
123427518 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.996     High  
cufflinks 67.584     High  
cufflinks 0.215       Low
cufflinks 0.427       Low
cufflinks 0.84       Low
cufflinks 64.874     High  
cufflinks 39.499     High  
cufflinks 88.926     High High
cufflinks 38.759     High  
cufflinks 73.803     High High
cufflinks 20.848     High  
cufflinks 21.762     High  
cufflinks 14.692     High  
cufflinks 1.96        
cufflinks 31.192     High  
cufflinks 1.415       Low
cufflinks 36.889     High  
cufflinks 1.082       Low
cufflinks 1.907        
cufflinks 52.076     High  

0 Strain