Gene : Seita.3G064300 S. italica v2.2
Defline:  (1 of 1) PTHR24128:SF14 - E3 UBIQUITIN-PROTEIN LIGASE XBAT31-RELATED Genomic Order:  643
Name:  ? Seita.3G064300 Secondary Identifier:  ? PAC:32712449
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G064300 0.5kb upstream 0.5kb upstream 3937 true scaffold_3: 4099199-4103135 Setaria italica
Seita.3G064300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4099199-4099698 Setaria italica
Seita.3G064300 0.5kb downstream 0.5kb downstream 3937 true scaffold_3: 4099699-4103635 Setaria italica
Seita.3G064300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4103136-4103635 Setaria italica
Seita.3G064300 1.0kb upstream 1.0kb upstream 4437 true scaffold_3: 4098699-4103135 Setaria italica
Seita.3G064300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4098699-4099698 Setaria italica
Seita.3G064300 1.0kb downstream 1.0kb downstream 4437 true scaffold_3: 4099699-4104135 Setaria italica
Seita.3G064300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4103136-4104135 Setaria italica
Seita.3G064300 2.0kb upstream 2.0kb upstream 5437 true scaffold_3: 4097699-4103135 Setaria italica
Seita.3G064300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4097699-4099698 Setaria italica
Seita.3G064300 2.0kb downstream 2.0kb downstream 5437 true scaffold_3: 4099699-4105135 Setaria italica
Seita.3G064300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4103136-4105135 Setaria italica
Seita.3G064300 5.0kb upstream 5.0kb upstream 8437 true scaffold_3: 4094699-4103135 Setaria italica
Seita.3G064300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4094699-4099698 Setaria italica
Seita.3G064300 5.0kb downstream 5.0kb downstream 8437 true scaffold_3: 4099699-4108135 Setaria italica
Seita.3G064300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4103136-4108135 Setaria italica
Seita.3G064300 10.0kb upstream 10.0kb upstream 13437 true scaffold_3: 4089699-4103135 Setaria italica
Seita.3G064300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4089699-4099698 Setaria italica
Seita.3G064300 10.0kb downstream 10.0kb downstream 13437 true scaffold_3: 4099699-4113135 Setaria italica
Seita.3G064300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4103136-4113135 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188894 5267 Panicoideae View MSA
124577818 5269 Grass View MSA
122045782 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121344984 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.032     High  
cufflinks 24.114     High  
cufflinks 27.987     High  
cufflinks 29.123     High  
cufflinks 33.008     High  
cufflinks 39.511     High  
cufflinks 15.034     High Low
cufflinks 32.21     High  
cufflinks 18.902     High Low
cufflinks 61.72     High High
cufflinks 41.347     High  
cufflinks 40.265     High  
cufflinks 85.061     High High
cufflinks 76.096     High High
cufflinks 72.793     High High
cufflinks 18.423     High Low
cufflinks 54.163     High  
cufflinks 12.978     High Low
cufflinks 20.192     High  
cufflinks 67.086     High High

0 Strain