Gene : Seita.3G072300 S. italica v2.2
Defline:  (1 of 5) PF07889 - Protein of unknown function (DUF1664) (DUF1664) Genomic Order:  723
Name:  ? Seita.3G072300 Secondary Identifier:  ? PAC:32712549
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G072300 0.5kb upstream 0.5kb upstream 3878 true scaffold_3: 4581076-4584953 Setaria italica
Seita.3G072300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4581076-4581575 Setaria italica
Seita.3G072300 0.5kb downstream 0.5kb downstream 3878 true scaffold_3: 4581576-4585453 Setaria italica
Seita.3G072300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4584954-4585453 Setaria italica
Seita.3G072300 1.0kb upstream 1.0kb upstream 4378 true scaffold_3: 4580576-4584953 Setaria italica
Seita.3G072300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4580576-4581575 Setaria italica
Seita.3G072300 1.0kb downstream 1.0kb downstream 4378 true scaffold_3: 4581576-4585953 Setaria italica
Seita.3G072300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4584954-4585953 Setaria italica
Seita.3G072300 2.0kb upstream 2.0kb upstream 5378 true scaffold_3: 4579576-4584953 Setaria italica
Seita.3G072300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4579576-4581575 Setaria italica
Seita.3G072300 2.0kb downstream 2.0kb downstream 5378 true scaffold_3: 4581576-4586953 Setaria italica
Seita.3G072300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4584954-4586953 Setaria italica
Seita.3G072300 5.0kb upstream 5.0kb upstream 8378 true scaffold_3: 4576576-4584953 Setaria italica
Seita.3G072300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4576576-4581575 Setaria italica
Seita.3G072300 5.0kb downstream 5.0kb downstream 8378 true scaffold_3: 4581576-4589953 Setaria italica
Seita.3G072300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4584954-4589953 Setaria italica
Seita.3G072300 10.0kb upstream 10.0kb upstream 13378 true scaffold_3: 4571576-4584953 Setaria italica
Seita.3G072300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4571576-4581575 Setaria italica
Seita.3G072300 10.0kb downstream 10.0kb downstream 13378 true scaffold_3: 4581576-4594953 Setaria italica
Seita.3G072300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4584954-4594953 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184368 5267 Panicoideae View MSA
124577394 5269 Grass View MSA
122042412 5273 Angiosperm View MSA
121350785 5274 Embryophyte View MSA
123428058 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.207        
cufflinks 0.523       High
cufflinks 0.028     Low Low
cufflinks 0.012     Low Low
cufflinks 0.016     Low Low
cufflinks 0.573       High
cufflinks 0.163        
cufflinks 0.279        
cufflinks 0.162        
cufflinks 0.404        
cufflinks 0.201        
cufflinks 0.247        
cufflinks 0.104     Low  
cufflinks 0.058     Low  
cufflinks 0.286        
cufflinks 0.121        
cufflinks 0.322        
cufflinks 0.106        
cufflinks 0.014     Low Low
cufflinks 0.361        

0 Strain