Gene : Seita.3G070200 S. italica v2.2
Defline:  (1 of 1) PF09835 - Uncharacterized protein conserved in bacteria (DUF2062) (DUF2062) Genomic Order:  702
Name:  ? Seita.3G070200 Secondary Identifier:  ? PAC:32711981
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G070200 0.5kb upstream 0.5kb upstream 3095 true scaffold_3: 4469320-4472414 Setaria italica
Seita.3G070200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4471915-4472414 Setaria italica
Seita.3G070200 0.5kb downstream 0.5kb downstream 3095 true scaffold_3: 4468820-4471914 Setaria italica
Seita.3G070200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4468820-4469319 Setaria italica
Seita.3G070200 1.0kb upstream 1.0kb upstream 3595 true scaffold_3: 4469320-4472914 Setaria italica
Seita.3G070200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4471915-4472914 Setaria italica
Seita.3G070200 1.0kb downstream 1.0kb downstream 3595 true scaffold_3: 4468320-4471914 Setaria italica
Seita.3G070200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4468320-4469319 Setaria italica
Seita.3G070200 2.0kb upstream 2.0kb upstream 4595 true scaffold_3: 4469320-4473914 Setaria italica
Seita.3G070200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4471915-4473914 Setaria italica
Seita.3G070200 2.0kb downstream 2.0kb downstream 4595 true scaffold_3: 4467320-4471914 Setaria italica
Seita.3G070200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4467320-4469319 Setaria italica
Seita.3G070200 5.0kb upstream 5.0kb upstream 7595 true scaffold_3: 4469320-4476914 Setaria italica
Seita.3G070200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4471915-4476914 Setaria italica
Seita.3G070200 5.0kb downstream 5.0kb downstream 7595 true scaffold_3: 4464320-4471914 Setaria italica
Seita.3G070200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4464320-4469319 Setaria italica
Seita.3G070200 10.0kb upstream 10.0kb upstream 12595 true scaffold_3: 4469320-4481914 Setaria italica
Seita.3G070200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4471915-4481914 Setaria italica
Seita.3G070200 10.0kb downstream 10.0kb downstream 12595 true scaffold_3: 4459320-4471914 Setaria italica
Seita.3G070200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4459320-4469319 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186356 5267 Panicoideae View MSA
124586163 5269 Grass View MSA
122044467 5273 Angiosperm View MSA
121347646 5274 Embryophyte View MSA
123380588 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.76        
cufflinks 19.169     High  
cufflinks 13.246     High  
cufflinks 11.899     High  
cufflinks 7.682       Low
cufflinks 20.953     High  
cufflinks 11.259        
cufflinks 11.304        
cufflinks 6.394       Low
cufflinks 18.462     High  
cufflinks 13.517     High  
cufflinks 20.043     High  
cufflinks 34.019     High High
cufflinks 17.921     High  
cufflinks 21.967     High  
cufflinks 9.854       Low
cufflinks 20.048     High  
cufflinks 11.714     High  
cufflinks 22.654     High  
cufflinks 20.961     High  

0 Strain