Gene : Seita.3G070300 S. italica v2.2
Defline:  (1 of 1) PTHR15140 - TUBULIN-SPECIFIC CHAPERONE E Genomic Order:  703
Name:  ? Seita.3G070300 Secondary Identifier:  ? PAC:32712823
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G070300 0.5kb upstream 0.5kb upstream 5417 true scaffold_3: 4472223-4477639 Setaria italica
Seita.3G070300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4477140-4477639 Setaria italica
Seita.3G070300 0.5kb downstream 0.5kb downstream 5417 true scaffold_3: 4471723-4477139 Setaria italica
Seita.3G070300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4471723-4472222 Setaria italica
Seita.3G070300 1.0kb upstream 1.0kb upstream 5917 true scaffold_3: 4472223-4478139 Setaria italica
Seita.3G070300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4477140-4478139 Setaria italica
Seita.3G070300 1.0kb downstream 1.0kb downstream 5917 true scaffold_3: 4471223-4477139 Setaria italica
Seita.3G070300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4471223-4472222 Setaria italica
Seita.3G070300 2.0kb upstream 2.0kb upstream 6917 true scaffold_3: 4472223-4479139 Setaria italica
Seita.3G070300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4477140-4479139 Setaria italica
Seita.3G070300 2.0kb downstream 2.0kb downstream 6917 true scaffold_3: 4470223-4477139 Setaria italica
Seita.3G070300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4470223-4472222 Setaria italica
Seita.3G070300 5.0kb upstream 5.0kb upstream 9917 true scaffold_3: 4472223-4482139 Setaria italica
Seita.3G070300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4477140-4482139 Setaria italica
Seita.3G070300 5.0kb downstream 5.0kb downstream 9917 true scaffold_3: 4467223-4477139 Setaria italica
Seita.3G070300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4467223-4472222 Setaria italica
Seita.3G070300 10.0kb upstream 10.0kb upstream 14917 true scaffold_3: 4472223-4487139 Setaria italica
Seita.3G070300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4477140-4487139 Setaria italica
Seita.3G070300 10.0kb downstream 10.0kb downstream 14917 true scaffold_3: 4462223-4477139 Setaria italica
Seita.3G070300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4462223-4472222 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188331 5267 Panicoideae View MSA
124568361 5269 Grass View MSA
122048021 5273 Angiosperm View MSA
121345532 5274 Embryophyte View MSA
123427074 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.03        
cufflinks 8.219        
cufflinks 4.49       Low
cufflinks 5.025        
cufflinks 4.55       Low
cufflinks 7.718        
cufflinks 5.831        
cufflinks 7.517        
cufflinks 5.115        
cufflinks 9.157        
cufflinks 7.483        
cufflinks 8.85        
cufflinks 11.582       High
cufflinks 4.313       Low
cufflinks 8.133        
cufflinks 6.241        
cufflinks 9.539       High
cufflinks 4.328       Low
cufflinks 3.711       Low
cufflinks 10.179       High

0 Strain