Gene : Seita.3G075700 S. italica v2.2
Defline:  (1 of 3) PTHR34777:SF1 - VQ MOTIF-CONTAINING PROTEIN Genomic Order:  757
Name:  ? Seita.3G075700 Secondary Identifier:  ? PAC:32710974
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G075700 0.5kb upstream 0.5kb upstream 1318 true scaffold_3: 4819029-4820346 Setaria italica
Seita.3G075700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4819029-4819528 Setaria italica
Seita.3G075700 0.5kb downstream 0.5kb downstream 1318 true scaffold_3: 4819529-4820846 Setaria italica
Seita.3G075700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4820347-4820846 Setaria italica
Seita.3G075700 1.0kb upstream 1.0kb upstream 1818 true scaffold_3: 4818529-4820346 Setaria italica
Seita.3G075700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4818529-4819528 Setaria italica
Seita.3G075700 1.0kb downstream 1.0kb downstream 1818 true scaffold_3: 4819529-4821346 Setaria italica
Seita.3G075700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4820347-4821346 Setaria italica
Seita.3G075700 2.0kb upstream 2.0kb upstream 2818 true scaffold_3: 4817529-4820346 Setaria italica
Seita.3G075700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4817529-4819528 Setaria italica
Seita.3G075700 2.0kb downstream 2.0kb downstream 2818 true scaffold_3: 4819529-4822346 Setaria italica
Seita.3G075700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4820347-4822346 Setaria italica
Seita.3G075700 5.0kb upstream 5.0kb upstream 5818 true scaffold_3: 4814529-4820346 Setaria italica
Seita.3G075700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4814529-4819528 Setaria italica
Seita.3G075700 5.0kb downstream 5.0kb downstream 5818 true scaffold_3: 4819529-4825346 Setaria italica
Seita.3G075700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4820347-4825346 Setaria italica
Seita.3G075700 10.0kb upstream 10.0kb upstream 10818 true scaffold_3: 4809529-4820346 Setaria italica
Seita.3G075700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4809529-4819528 Setaria italica
Seita.3G075700 10.0kb downstream 10.0kb downstream 10818 true scaffold_3: 4819529-4830346 Setaria italica
Seita.3G075700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4820347-4830346 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026461 5273 Angiosperm View MSA
122117544 5267 Panicoideae View MSA
124587396 5269 Grass View MSA
121296343 5274 Embryophyte View MSA
123334522 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.124     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.319       High

0 Strain