Gene : Seita.3G073000 S. italica v2.2
Defline:  (1 of 1) PTHR11945//PTHR11945:SF217 - MADS BOX PROTEIN Genomic Order:  730
Name:  ? Seita.3G073000 Secondary Identifier:  ? PAC:32713634
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G073000 0.5kb upstream 0.5kb upstream 9087 true scaffold_3: 4614845-4623931 Setaria italica
Seita.3G073000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4623432-4623931 Setaria italica
Seita.3G073000 0.5kb downstream 0.5kb downstream 9087 true scaffold_3: 4614345-4623431 Setaria italica
Seita.3G073000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4614345-4614844 Setaria italica
Seita.3G073000 1.0kb upstream 1.0kb upstream 9587 true scaffold_3: 4614845-4624431 Setaria italica
Seita.3G073000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4623432-4624431 Setaria italica
Seita.3G073000 1.0kb downstream 1.0kb downstream 9587 true scaffold_3: 4613845-4623431 Setaria italica
Seita.3G073000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4613845-4614844 Setaria italica
Seita.3G073000 2.0kb upstream 2.0kb upstream 10587 true scaffold_3: 4614845-4625431 Setaria italica
Seita.3G073000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4623432-4625431 Setaria italica
Seita.3G073000 2.0kb downstream 2.0kb downstream 10587 true scaffold_3: 4612845-4623431 Setaria italica
Seita.3G073000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4612845-4614844 Setaria italica
Seita.3G073000 5.0kb upstream 5.0kb upstream 13587 true scaffold_3: 4614845-4628431 Setaria italica
Seita.3G073000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4623432-4628431 Setaria italica
Seita.3G073000 5.0kb downstream 5.0kb downstream 13587 true scaffold_3: 4609845-4623431 Setaria italica
Seita.3G073000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4609845-4614844 Setaria italica
Seita.3G073000 10.0kb upstream 10.0kb upstream 18587 true scaffold_3: 4614845-4633431 Setaria italica
Seita.3G073000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4623432-4633431 Setaria italica
Seita.3G073000 10.0kb downstream 10.0kb downstream 18587 true scaffold_3: 4604845-4623431 Setaria italica
Seita.3G073000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4604845-4614844 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179935 5267 Panicoideae View MSA
124582266 5269 Grass View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.042     Low  
cufflinks 1.38       High
cufflinks 0.081        
cufflinks 0.083     Low  
cufflinks 0.083        
cufflinks 1.313       High
cufflinks 0.183        
cufflinks 0.119     Low  
cufflinks 0.145        
cufflinks 0.01     Low Low
cufflinks 0.054     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.08     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.188        
cufflinks 0.004     Low Low
cufflinks 0.189        
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain