Gene : Seita.3G085400 S. italica v2.2
Defline:  (1 of 1) PTHR11081:SF27 - 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  854
Name:  ? Seita.3G085400 Secondary Identifier:  ? PAC:32711428
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G085400 0.5kb upstream 0.5kb upstream 6307 true scaffold_3: 5493838-5500144 Setaria italica
Seita.3G085400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5499645-5500144 Setaria italica
Seita.3G085400 0.5kb downstream 0.5kb downstream 6307 true scaffold_3: 5493338-5499644 Setaria italica
Seita.3G085400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5493338-5493837 Setaria italica
Seita.3G085400 1.0kb upstream 1.0kb upstream 6807 true scaffold_3: 5493838-5500644 Setaria italica
Seita.3G085400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5499645-5500644 Setaria italica
Seita.3G085400 1.0kb downstream 1.0kb downstream 6807 true scaffold_3: 5492838-5499644 Setaria italica
Seita.3G085400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5492838-5493837 Setaria italica
Seita.3G085400 2.0kb upstream 2.0kb upstream 7807 true scaffold_3: 5493838-5501644 Setaria italica
Seita.3G085400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5499645-5501644 Setaria italica
Seita.3G085400 2.0kb downstream 2.0kb downstream 7807 true scaffold_3: 5491838-5499644 Setaria italica
Seita.3G085400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5491838-5493837 Setaria italica
Seita.3G085400 5.0kb upstream 5.0kb upstream 10807 true scaffold_3: 5493838-5504644 Setaria italica
Seita.3G085400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5499645-5504644 Setaria italica
Seita.3G085400 5.0kb downstream 5.0kb downstream 10807 true scaffold_3: 5488838-5499644 Setaria italica
Seita.3G085400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5488838-5493837 Setaria italica
Seita.3G085400 10.0kb upstream 10.0kb upstream 15807 true scaffold_3: 5493838-5509644 Setaria italica
Seita.3G085400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5499645-5509644 Setaria italica
Seita.3G085400 10.0kb downstream 10.0kb downstream 15807 true scaffold_3: 5483838-5499644 Setaria italica
Seita.3G085400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5483838-5493837 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026411 5273 Angiosperm View MSA
122188530 5267 Panicoideae View MSA
124583410 5269 Grass View MSA
121349640 5274 Embryophyte View MSA
123426218 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.401        
cufflinks 0.634        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.506        
cufflinks 0.382        
cufflinks 0.687        
cufflinks 0.302        
cufflinks 0.483        
cufflinks 0.58        
cufflinks 0.54        
cufflinks 0.338        
cufflinks 0.01     Low Low
cufflinks 0.695        
cufflinks 0.024     Low Low
cufflinks 0.764        
cufflinks 0.033     Low Low
cufflinks 0.016     Low Low
cufflinks 0.853        

0 Strain