Gene : Seita.3G085500 S. italica v2.2
Defline:  (1 of 1) PTHR23306:SF19 - UBIQUITIN-CONJUGATING ENZYME/RWD-LIKE PROTEIN Genomic Order:  855
Name:  ? Seita.3G085500 Secondary Identifier:  ? PAC:32710332
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G085500 0.5kb upstream 0.5kb upstream 2007 true scaffold_3: 5500670-5502676 Setaria italica
Seita.3G085500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5500670-5501169 Setaria italica
Seita.3G085500 0.5kb downstream 0.5kb downstream 2007 true scaffold_3: 5501170-5503176 Setaria italica
Seita.3G085500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5502677-5503176 Setaria italica
Seita.3G085500 1.0kb upstream 1.0kb upstream 2507 true scaffold_3: 5500170-5502676 Setaria italica
Seita.3G085500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5500170-5501169 Setaria italica
Seita.3G085500 1.0kb downstream 1.0kb downstream 2507 true scaffold_3: 5501170-5503676 Setaria italica
Seita.3G085500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5502677-5503676 Setaria italica
Seita.3G085500 2.0kb upstream 2.0kb upstream 3507 true scaffold_3: 5499170-5502676 Setaria italica
Seita.3G085500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5499170-5501169 Setaria italica
Seita.3G085500 2.0kb downstream 2.0kb downstream 3507 true scaffold_3: 5501170-5504676 Setaria italica
Seita.3G085500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5502677-5504676 Setaria italica
Seita.3G085500 5.0kb upstream 5.0kb upstream 6507 true scaffold_3: 5496170-5502676 Setaria italica
Seita.3G085500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5496170-5501169 Setaria italica
Seita.3G085500 5.0kb downstream 5.0kb downstream 6507 true scaffold_3: 5501170-5507676 Setaria italica
Seita.3G085500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5502677-5507676 Setaria italica
Seita.3G085500 10.0kb upstream 10.0kb upstream 11507 true scaffold_3: 5491170-5502676 Setaria italica
Seita.3G085500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5491170-5501169 Setaria italica
Seita.3G085500 10.0kb downstream 10.0kb downstream 11507 true scaffold_3: 5501170-5512676 Setaria italica
Seita.3G085500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5502677-5512676 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194299 5267 Panicoideae View MSA
124589689 5269 Grass View MSA
122050424 5273 Angiosperm View MSA
121347695 5274 Embryophyte View MSA
123427966 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.477       Low
cufflinks 1.478        
cufflinks 1.978        
cufflinks 2.247        
cufflinks 1.973        
cufflinks 1.493        
cufflinks 1.529        
cufflinks 1.82        
cufflinks 0.443       Low
cufflinks 1.367        
cufflinks 0.285       Low
cufflinks 0.861        
cufflinks 1.22        
cufflinks 5.741       High
cufflinks 0.929        
cufflinks 1.293        
cufflinks 0.688        
cufflinks 1.948        
cufflinks 1.233        
cufflinks 1.074        

0 Strain