Gene : Seita.3G087700 S. italica v2.2
Defline:  (1 of 7) PF07676 - WD40-like Beta Propeller Repeat (PD40) Genomic Order:  877
Name:  ? Seita.3G087700 Secondary Identifier:  ? PAC:32712725
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G087700 0.5kb upstream 0.5kb upstream 3334 true scaffold_3: 5643415-5646748 Setaria italica
Seita.3G087700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5646249-5646748 Setaria italica
Seita.3G087700 0.5kb downstream 0.5kb downstream 3334 true scaffold_3: 5642915-5646248 Setaria italica
Seita.3G087700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5642915-5643414 Setaria italica
Seita.3G087700 1.0kb upstream 1.0kb upstream 3834 true scaffold_3: 5643415-5647248 Setaria italica
Seita.3G087700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5646249-5647248 Setaria italica
Seita.3G087700 1.0kb downstream 1.0kb downstream 3834 true scaffold_3: 5642415-5646248 Setaria italica
Seita.3G087700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5642415-5643414 Setaria italica
Seita.3G087700 2.0kb upstream 2.0kb upstream 4834 true scaffold_3: 5643415-5648248 Setaria italica
Seita.3G087700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5646249-5648248 Setaria italica
Seita.3G087700 2.0kb downstream 2.0kb downstream 4834 true scaffold_3: 5641415-5646248 Setaria italica
Seita.3G087700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5641415-5643414 Setaria italica
Seita.3G087700 5.0kb upstream 5.0kb upstream 7834 true scaffold_3: 5643415-5651248 Setaria italica
Seita.3G087700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5646249-5651248 Setaria italica
Seita.3G087700 5.0kb downstream 5.0kb downstream 7834 true scaffold_3: 5638415-5646248 Setaria italica
Seita.3G087700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5638415-5643414 Setaria italica
Seita.3G087700 10.0kb upstream 10.0kb upstream 12834 true scaffold_3: 5643415-5656248 Setaria italica
Seita.3G087700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5646249-5656248 Setaria italica
Seita.3G087700 10.0kb downstream 10.0kb downstream 12834 true scaffold_3: 5633415-5646248 Setaria italica
Seita.3G087700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5633415-5643414 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028106 5273 Angiosperm View MSA
122116564 5267 Panicoideae View MSA
124587409 5269 Grass View MSA
121297649 5274 Embryophyte View MSA
123335684 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.473        
cufflinks 1.24        
cufflinks 0.046     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.038     Low Low
cufflinks 0.369        
cufflinks 2.438        
cufflinks 0.473        
cufflinks 0.207        
cufflinks 5.175       High
cufflinks 4.969       High
cufflinks 2.363        
cufflinks 0.575        
cufflinks 0.911        
cufflinks 7.359       High
cufflinks 0.027     Low Low
cufflinks 2.13        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.285        
cufflinks 4.014        

0 Strain