Gene : Seita.3G087900 S. italica v2.2
Defline:  (1 of 7) PF07676 - WD40-like Beta Propeller Repeat (PD40) Genomic Order:  879
Name:  ? Seita.3G087900 Secondary Identifier:  ? PAC:32711762
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G087900 0.5kb upstream 0.5kb upstream 3480 true scaffold_3: 5672018-5675497 Setaria italica
Seita.3G087900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5674998-5675497 Setaria italica
Seita.3G087900 0.5kb downstream 0.5kb downstream 3480 true scaffold_3: 5671518-5674997 Setaria italica
Seita.3G087900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5671518-5672017 Setaria italica
Seita.3G087900 1.0kb upstream 1.0kb upstream 3980 true scaffold_3: 5672018-5675997 Setaria italica
Seita.3G087900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5674998-5675997 Setaria italica
Seita.3G087900 1.0kb downstream 1.0kb downstream 3980 true scaffold_3: 5671018-5674997 Setaria italica
Seita.3G087900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5671018-5672017 Setaria italica
Seita.3G087900 2.0kb upstream 2.0kb upstream 4980 true scaffold_3: 5672018-5676997 Setaria italica
Seita.3G087900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5674998-5676997 Setaria italica
Seita.3G087900 2.0kb downstream 2.0kb downstream 4980 true scaffold_3: 5670018-5674997 Setaria italica
Seita.3G087900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5670018-5672017 Setaria italica
Seita.3G087900 5.0kb upstream 5.0kb upstream 7980 true scaffold_3: 5672018-5679997 Setaria italica
Seita.3G087900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5674998-5679997 Setaria italica
Seita.3G087900 5.0kb downstream 5.0kb downstream 7980 true scaffold_3: 5667018-5674997 Setaria italica
Seita.3G087900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5667018-5672017 Setaria italica
Seita.3G087900 10.0kb upstream 10.0kb upstream 12980 true scaffold_3: 5672018-5684997 Setaria italica
Seita.3G087900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5674998-5684997 Setaria italica
Seita.3G087900 10.0kb downstream 10.0kb downstream 12980 true scaffold_3: 5662018-5674997 Setaria italica
Seita.3G087900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5662018-5672017 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028106 5273 Angiosperm View MSA
122192807 5267 Panicoideae View MSA
124587409 5269 Grass View MSA
121297649 5274 Embryophyte View MSA
123335684 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.495        
cufflinks 0.122        
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low
cufflinks 0.03     Low  
cufflinks 0.03     Low  
cufflinks 0.069     Low  
cufflinks 0.016     Low Low
cufflinks 0.753       High
cufflinks 0.583        
cufflinks 0.703        
cufflinks 0.202        
cufflinks 0.057     Low  
cufflinks 3.037       High
cufflinks 0.02     Low Low
cufflinks 0.571        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.067     Low  
cufflinks 1.079       High

0 Strain