Gene : Seita.3G091300 S. italica v2.2
Defline:  (1 of 2) PTHR23181 - RHO GTPASE ACTIVATING PROTEIN Genomic Order:  913
Name:  ? Seita.3G091300 Secondary Identifier:  ? PAC:32710518
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G091300 0.5kb upstream 0.5kb upstream 2418 true scaffold_3: 5909385-5911802 Setaria italica
Seita.3G091300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5911303-5911802 Setaria italica
Seita.3G091300 0.5kb downstream 0.5kb downstream 2418 true scaffold_3: 5908885-5911302 Setaria italica
Seita.3G091300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5908885-5909384 Setaria italica
Seita.3G091300 1.0kb upstream 1.0kb upstream 2918 true scaffold_3: 5909385-5912302 Setaria italica
Seita.3G091300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5911303-5912302 Setaria italica
Seita.3G091300 1.0kb downstream 1.0kb downstream 2918 true scaffold_3: 5908385-5911302 Setaria italica
Seita.3G091300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5908385-5909384 Setaria italica
Seita.3G091300 2.0kb upstream 2.0kb upstream 3918 true scaffold_3: 5909385-5913302 Setaria italica
Seita.3G091300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5911303-5913302 Setaria italica
Seita.3G091300 2.0kb downstream 2.0kb downstream 3918 true scaffold_3: 5907385-5911302 Setaria italica
Seita.3G091300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5907385-5909384 Setaria italica
Seita.3G091300 5.0kb upstream 5.0kb upstream 6918 true scaffold_3: 5909385-5916302 Setaria italica
Seita.3G091300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5911303-5916302 Setaria italica
Seita.3G091300 5.0kb downstream 5.0kb downstream 6918 true scaffold_3: 5904385-5911302 Setaria italica
Seita.3G091300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5904385-5909384 Setaria italica
Seita.3G091300 10.0kb upstream 10.0kb upstream 11918 true scaffold_3: 5909385-5921302 Setaria italica
Seita.3G091300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5911303-5921302 Setaria italica
Seita.3G091300 10.0kb downstream 10.0kb downstream 11918 true scaffold_3: 5899385-5911302 Setaria italica
Seita.3G091300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5899385-5909384 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182366 5267 Panicoideae View MSA
124576261 5269 Grass View MSA
122050740 5273 Angiosperm View MSA
121350407 5274 Embryophyte View MSA
123381715 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.477        
cufflinks 4.23       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.01       High
cufflinks 0.701        
cufflinks 1.499        
cufflinks 0.405        
cufflinks 0.733        
cufflinks 0.548        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.301        
cufflinks 0.009     Low Low
cufflinks 0.472        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain