Gene : Seita.3G089800 S. italica v2.2
Defline:  (1 of 2) PTHR23359//PTHR23359:SF99 - NUCLEOTIDE KINASE Genomic Order:  898
Name:  ? Seita.3G089800 Secondary Identifier:  ? PAC:32711678
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7219 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G089800 0.5kb upstream 0.5kb upstream 4073 true scaffold_3: 5796094-5800166 Setaria italica
Seita.3G089800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5799667-5800166 Setaria italica
Seita.3G089800 0.5kb downstream 0.5kb downstream 4073 true scaffold_3: 5795594-5799666 Setaria italica
Seita.3G089800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5795594-5796093 Setaria italica
Seita.3G089800 1.0kb upstream 1.0kb upstream 4573 true scaffold_3: 5796094-5800666 Setaria italica
Seita.3G089800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5799667-5800666 Setaria italica
Seita.3G089800 1.0kb downstream 1.0kb downstream 4573 true scaffold_3: 5795094-5799666 Setaria italica
Seita.3G089800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5795094-5796093 Setaria italica
Seita.3G089800 2.0kb upstream 2.0kb upstream 5573 true scaffold_3: 5796094-5801666 Setaria italica
Seita.3G089800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5799667-5801666 Setaria italica
Seita.3G089800 2.0kb downstream 2.0kb downstream 5573 true scaffold_3: 5794094-5799666 Setaria italica
Seita.3G089800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5794094-5796093 Setaria italica
Seita.3G089800 5.0kb upstream 5.0kb upstream 8573 true scaffold_3: 5796094-5804666 Setaria italica
Seita.3G089800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5799667-5804666 Setaria italica
Seita.3G089800 5.0kb downstream 5.0kb downstream 8573 true scaffold_3: 5791094-5799666 Setaria italica
Seita.3G089800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5791094-5796093 Setaria italica
Seita.3G089800 10.0kb upstream 10.0kb upstream 13573 true scaffold_3: 5796094-5809666 Setaria italica
Seita.3G089800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5799667-5809666 Setaria italica
Seita.3G089800 10.0kb downstream 10.0kb downstream 13573 true scaffold_3: 5786094-5799666 Setaria italica
Seita.3G089800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5786094-5796093 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041419 5273 Angiosperm View MSA
122192416 5267 Panicoideae View MSA
124587378 5269 Grass View MSA
121350908 5274 Embryophyte View MSA
123427854 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.574     High  
cufflinks 22.281     High  
cufflinks 2.096       Low
cufflinks 1.82       Low
cufflinks 3.463       Low
cufflinks 25.563     High  
cufflinks 12.958        
cufflinks 21.346     High  
cufflinks 19.03     High  
cufflinks 15.538        
cufflinks 13.942     High  
cufflinks 24.495     High  
cufflinks 27.891     High  
cufflinks 4.992        
cufflinks 24.982     High  
cufflinks 5.372        
cufflinks 33.277     High High
cufflinks 5.649        
cufflinks 3.663       Low
cufflinks 32.481     High High

0 Strain