Gene : Seita.3G091800 S. italica v2.2
Defline:  (1 of 3) PTHR11638//PTHR11638:SF96 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  918
Name:  ? Seita.3G091800 Secondary Identifier:  ? PAC:32713204
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G091800 0.5kb upstream 0.5kb upstream 7040 true scaffold_3: 5977833-5984872 Setaria italica
Seita.3G091800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5984373-5984872 Setaria italica
Seita.3G091800 0.5kb downstream 0.5kb downstream 7040 true scaffold_3: 5977333-5984372 Setaria italica
Seita.3G091800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5977333-5977832 Setaria italica
Seita.3G091800 1.0kb upstream 1.0kb upstream 7540 true scaffold_3: 5977833-5985372 Setaria italica
Seita.3G091800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5984373-5985372 Setaria italica
Seita.3G091800 1.0kb downstream 1.0kb downstream 7540 true scaffold_3: 5976833-5984372 Setaria italica
Seita.3G091800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5976833-5977832 Setaria italica
Seita.3G091800 2.0kb upstream 2.0kb upstream 8540 true scaffold_3: 5977833-5986372 Setaria italica
Seita.3G091800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5984373-5986372 Setaria italica
Seita.3G091800 2.0kb downstream 2.0kb downstream 8540 true scaffold_3: 5975833-5984372 Setaria italica
Seita.3G091800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5975833-5977832 Setaria italica
Seita.3G091800 5.0kb upstream 5.0kb upstream 11540 true scaffold_3: 5977833-5989372 Setaria italica
Seita.3G091800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5984373-5989372 Setaria italica
Seita.3G091800 5.0kb downstream 5.0kb downstream 11540 true scaffold_3: 5972833-5984372 Setaria italica
Seita.3G091800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5972833-5977832 Setaria italica
Seita.3G091800 10.0kb upstream 10.0kb upstream 16540 true scaffold_3: 5977833-5994372 Setaria italica
Seita.3G091800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5984373-5994372 Setaria italica
Seita.3G091800 10.0kb downstream 10.0kb downstream 16540 true scaffold_3: 5967833-5984372 Setaria italica
Seita.3G091800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5967833-5977832 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993252 5273 Angiosperm View MSA
122183710 5267 Panicoideae View MSA
124576442 5269 Grass View MSA
121263546 5274 Embryophyte View MSA
123302078 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.256     High  
cufflinks 39.717     High  
cufflinks 728.863     High High
cufflinks 613.467     High High
cufflinks 461.832     High High
cufflinks 31.771     High  
cufflinks 119.606     High  
cufflinks 201.044     High  
cufflinks 165.596     High  
cufflinks 6.635       Low
cufflinks 15.734     High  
cufflinks 10.251       Low
cufflinks 12.548        
cufflinks 572.556     High High
cufflinks 12.4        
cufflinks 159.357     High  
cufflinks 7.69       Low
cufflinks 70.211     High  
cufflinks 374.007     High High
cufflinks 8.278       Low

0 Strain