Gene : Seita.3G096400 S. italica v2.2
Defline:  (1 of 1) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  964
Name:  ? Seita.3G096400 Secondary Identifier:  ? PAC:32710482
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1269 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G096400 0.5kb upstream 0.5kb upstream 5932 true scaffold_3: 6285049-6290980 Setaria italica
Seita.3G096400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6290481-6290980 Setaria italica
Seita.3G096400 0.5kb downstream 0.5kb downstream 5932 true scaffold_3: 6284549-6290480 Setaria italica
Seita.3G096400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6284549-6285048 Setaria italica
Seita.3G096400 1.0kb upstream 1.0kb upstream 6432 true scaffold_3: 6285049-6291480 Setaria italica
Seita.3G096400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6290481-6291480 Setaria italica
Seita.3G096400 1.0kb downstream 1.0kb downstream 6432 true scaffold_3: 6284049-6290480 Setaria italica
Seita.3G096400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6284049-6285048 Setaria italica
Seita.3G096400 2.0kb upstream 2.0kb upstream 7432 true scaffold_3: 6285049-6292480 Setaria italica
Seita.3G096400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6290481-6292480 Setaria italica
Seita.3G096400 2.0kb downstream 2.0kb downstream 7432 true scaffold_3: 6283049-6290480 Setaria italica
Seita.3G096400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6283049-6285048 Setaria italica
Seita.3G096400 5.0kb upstream 5.0kb upstream 10432 true scaffold_3: 6285049-6295480 Setaria italica
Seita.3G096400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6290481-6295480 Setaria italica
Seita.3G096400 5.0kb downstream 5.0kb downstream 10432 true scaffold_3: 6280049-6290480 Setaria italica
Seita.3G096400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6280049-6285048 Setaria italica
Seita.3G096400 10.0kb upstream 10.0kb upstream 15432 true scaffold_3: 6285049-6300480 Setaria italica
Seita.3G096400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6290481-6300480 Setaria italica
Seita.3G096400 10.0kb downstream 10.0kb downstream 15432 true scaffold_3: 6275049-6290480 Setaria italica
Seita.3G096400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6275049-6285048 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186884 5267 Panicoideae View MSA
124580586 5269 Grass View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.007        
cufflinks 8.177       High
cufflinks 0.152       Low
cufflinks 0.067     Low Low
cufflinks 0.296       Low
cufflinks 8.068       High
cufflinks 2.516        
cufflinks 6.668       High
cufflinks 4.347        
cufflinks 5.656        
cufflinks 4.661        
cufflinks 1.481        
cufflinks 4.023        
cufflinks 0.356        
cufflinks 3.109        
cufflinks 0.612        
cufflinks 2.261        
cufflinks 0.205       Low
cufflinks 0.196       Low
cufflinks 3.34        

0 Strain