Gene : Seita.3G020000 S. italica v2.2
Defline:  (1 of 1) PTHR31384:SF2 - AUXIN RESPONSE FACTOR 8 Genomic Order:  200
Name:  ? Seita.3G020000 Secondary Identifier:  ? PAC:32710046
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G020000 0.5kb upstream 0.5kb upstream 8735 true scaffold_3: 1162415-1171149 Setaria italica
Seita.3G020000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1162415-1162914 Setaria italica
Seita.3G020000 0.5kb downstream 0.5kb downstream 8735 true scaffold_3: 1162915-1171649 Setaria italica
Seita.3G020000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1171150-1171649 Setaria italica
Seita.3G020000 1.0kb upstream 1.0kb upstream 9235 true scaffold_3: 1161915-1171149 Setaria italica
Seita.3G020000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1161915-1162914 Setaria italica
Seita.3G020000 1.0kb downstream 1.0kb downstream 9235 true scaffold_3: 1162915-1172149 Setaria italica
Seita.3G020000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1171150-1172149 Setaria italica
Seita.3G020000 2.0kb upstream 2.0kb upstream 10235 true scaffold_3: 1160915-1171149 Setaria italica
Seita.3G020000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1160915-1162914 Setaria italica
Seita.3G020000 2.0kb downstream 2.0kb downstream 10235 true scaffold_3: 1162915-1173149 Setaria italica
Seita.3G020000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1171150-1173149 Setaria italica
Seita.3G020000 5.0kb upstream 5.0kb upstream 13235 true scaffold_3: 1157915-1171149 Setaria italica
Seita.3G020000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1157915-1162914 Setaria italica
Seita.3G020000 5.0kb downstream 5.0kb downstream 13235 true scaffold_3: 1162915-1176149 Setaria italica
Seita.3G020000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1171150-1176149 Setaria italica
Seita.3G020000 10.0kb upstream 10.0kb upstream 18235 true scaffold_3: 1152915-1171149 Setaria italica
Seita.3G020000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1152915-1162914 Setaria italica
Seita.3G020000 10.0kb downstream 10.0kb downstream 18235 true scaffold_3: 1162915-1181149 Setaria italica
Seita.3G020000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1171150-1181149 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181848 5267 Panicoideae View MSA
124574906 5269 Grass View MSA
122048595 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.008        
cufflinks 12.562       High
cufflinks 0.822       Low
cufflinks 0.628       Low
cufflinks 0.89       Low
cufflinks 14.537     High High
cufflinks 7.526        
cufflinks 6.509        
cufflinks 5.557        
cufflinks 5.839        
cufflinks 9.431       High
cufflinks 2.236        
cufflinks 3.261        
cufflinks 4.293        
cufflinks 3.626        
cufflinks 4.868        
cufflinks 3.014        
cufflinks 2.864        
cufflinks 1.229       Low
cufflinks 3.969        

0 Strain