Gene : Seita.3G020400 S. italica v2.2
Defline:  (1 of 1) PTHR10742:SF228 - POLYAMINE OXIDASE 4-RELATED Genomic Order:  204
Name:  ? Seita.3G020400 Secondary Identifier:  ? PAC:32711854
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6441 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G020400 0.5kb upstream 0.5kb upstream 4640 true scaffold_3: 1196015-1200654 Setaria italica
Seita.3G020400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1196015-1196514 Setaria italica
Seita.3G020400 0.5kb downstream 0.5kb downstream 4640 true scaffold_3: 1196515-1201154 Setaria italica
Seita.3G020400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1200655-1201154 Setaria italica
Seita.3G020400 1.0kb upstream 1.0kb upstream 5140 true scaffold_3: 1195515-1200654 Setaria italica
Seita.3G020400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1195515-1196514 Setaria italica
Seita.3G020400 1.0kb downstream 1.0kb downstream 5140 true scaffold_3: 1196515-1201654 Setaria italica
Seita.3G020400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1200655-1201654 Setaria italica
Seita.3G020400 2.0kb upstream 2.0kb upstream 6140 true scaffold_3: 1194515-1200654 Setaria italica
Seita.3G020400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1194515-1196514 Setaria italica
Seita.3G020400 2.0kb downstream 2.0kb downstream 6140 true scaffold_3: 1196515-1202654 Setaria italica
Seita.3G020400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1200655-1202654 Setaria italica
Seita.3G020400 5.0kb upstream 5.0kb upstream 9140 true scaffold_3: 1191515-1200654 Setaria italica
Seita.3G020400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1191515-1196514 Setaria italica
Seita.3G020400 5.0kb downstream 5.0kb downstream 9140 true scaffold_3: 1196515-1205654 Setaria italica
Seita.3G020400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1200655-1205654 Setaria italica
Seita.3G020400 10.0kb upstream 10.0kb upstream 14140 true scaffold_3: 1186515-1200654 Setaria italica
Seita.3G020400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1186515-1196514 Setaria italica
Seita.3G020400 10.0kb downstream 10.0kb downstream 14140 true scaffold_3: 1196515-1210654 Setaria italica
Seita.3G020400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1200655-1210654 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183480 5267 Panicoideae View MSA
124571782 5269 Grass View MSA
122049478 5273 Angiosperm View MSA
121311425 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.848     High  
cufflinks 27.624     High Low
cufflinks 60.088     High  
cufflinks 104.645     High  
cufflinks 69.226     High  
cufflinks 34.092     High Low
cufflinks 58.056     High  
cufflinks 43.872     High  
cufflinks 45.104     High  
cufflinks 82.304     High  
cufflinks 127.326     High High
cufflinks 82.726     High  
cufflinks 121.151     High High
cufflinks 77.87     High  
cufflinks 139.375     High High
cufflinks 31.145     High Low
cufflinks 165.796     High High
cufflinks 85.015     High  
cufflinks 54.107     High  
cufflinks 92.008     High  

0 Strain