Gene : Seita.3G020300 S. italica v2.2
Defline:  (1 of 1) PTHR11019:SF112 - DJ-1/THIJ/PFPI FAMILY PROTEIN Genomic Order:  203
Name:  ? Seita.3G020300 Secondary Identifier:  ? PAC:32711761
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G020300 0.5kb upstream 0.5kb upstream 3718 true scaffold_3: 1181005-1184722 Setaria italica
Seita.3G020300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1181005-1181504 Setaria italica
Seita.3G020300 0.5kb downstream 0.5kb downstream 3718 true scaffold_3: 1181505-1185222 Setaria italica
Seita.3G020300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1184723-1185222 Setaria italica
Seita.3G020300 1.0kb upstream 1.0kb upstream 4218 true scaffold_3: 1180505-1184722 Setaria italica
Seita.3G020300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1180505-1181504 Setaria italica
Seita.3G020300 1.0kb downstream 1.0kb downstream 4218 true scaffold_3: 1181505-1185722 Setaria italica
Seita.3G020300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1184723-1185722 Setaria italica
Seita.3G020300 2.0kb upstream 2.0kb upstream 5218 true scaffold_3: 1179505-1184722 Setaria italica
Seita.3G020300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1179505-1181504 Setaria italica
Seita.3G020300 2.0kb downstream 2.0kb downstream 5218 true scaffold_3: 1181505-1186722 Setaria italica
Seita.3G020300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1184723-1186722 Setaria italica
Seita.3G020300 5.0kb upstream 5.0kb upstream 8218 true scaffold_3: 1176505-1184722 Setaria italica
Seita.3G020300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1176505-1181504 Setaria italica
Seita.3G020300 5.0kb downstream 5.0kb downstream 8218 true scaffold_3: 1181505-1189722 Setaria italica
Seita.3G020300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1184723-1189722 Setaria italica
Seita.3G020300 10.0kb upstream 10.0kb upstream 13218 true scaffold_3: 1171505-1184722 Setaria italica
Seita.3G020300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1171505-1181504 Setaria italica
Seita.3G020300 10.0kb downstream 10.0kb downstream 13218 true scaffold_3: 1181505-1194722 Setaria italica
Seita.3G020300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1184723-1194722 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041191 5273 Angiosperm View MSA
122175781 5267 Panicoideae View MSA
124576134 5269 Grass View MSA
121345877 5274 Embryophyte View MSA
123380281 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.663     High  
cufflinks 14.01     High  
cufflinks 18.287     High  
cufflinks 19.895     High  
cufflinks 17.146     High  
cufflinks 13.414     High  
cufflinks 10.0       Low
cufflinks 11.379       Low
cufflinks 8.707       Low
cufflinks 25.483     High  
cufflinks 22.048     High  
cufflinks 14.794     High  
cufflinks 45.874     High High
cufflinks 12.556        
cufflinks 29.895     High High
cufflinks 17.814     High  
cufflinks 22.235     High  
cufflinks 17.911     High  
cufflinks 33.117     High High
cufflinks 26.399     High  

0 Strain