Gene : Seita.3G020600 S. italica v2.2
Defline:  (1 of 1) PTHR10742//PTHR10742:SF264 - AMINE OXIDASE Genomic Order:  206
Name:  ? Seita.3G020600 Secondary Identifier:  ? PAC:32709769
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6441 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G020600 0.5kb upstream 0.5kb upstream 4272 true scaffold_3: 1200941-1205212 Setaria italica
Seita.3G020600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1200941-1201440 Setaria italica
Seita.3G020600 0.5kb downstream 0.5kb downstream 4272 true scaffold_3: 1201441-1205712 Setaria italica
Seita.3G020600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1205213-1205712 Setaria italica
Seita.3G020600 1.0kb upstream 1.0kb upstream 4772 true scaffold_3: 1200441-1205212 Setaria italica
Seita.3G020600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1200441-1201440 Setaria italica
Seita.3G020600 1.0kb downstream 1.0kb downstream 4772 true scaffold_3: 1201441-1206212 Setaria italica
Seita.3G020600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1205213-1206212 Setaria italica
Seita.3G020600 2.0kb upstream 2.0kb upstream 5772 true scaffold_3: 1199441-1205212 Setaria italica
Seita.3G020600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1199441-1201440 Setaria italica
Seita.3G020600 2.0kb downstream 2.0kb downstream 5772 true scaffold_3: 1201441-1207212 Setaria italica
Seita.3G020600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1205213-1207212 Setaria italica
Seita.3G020600 5.0kb upstream 5.0kb upstream 8772 true scaffold_3: 1196441-1205212 Setaria italica
Seita.3G020600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1196441-1201440 Setaria italica
Seita.3G020600 5.0kb downstream 5.0kb downstream 8772 true scaffold_3: 1201441-1210212 Setaria italica
Seita.3G020600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1205213-1210212 Setaria italica
Seita.3G020600 10.0kb upstream 10.0kb upstream 13772 true scaffold_3: 1191441-1205212 Setaria italica
Seita.3G020600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1191441-1201440 Setaria italica
Seita.3G020600 10.0kb downstream 10.0kb downstream 13772 true scaffold_3: 1201441-1215212 Setaria italica
Seita.3G020600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1205213-1215212 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185561 5267 Panicoideae View MSA
124588297 5269 Grass View MSA
122049478 5273 Angiosperm View MSA
121311425 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.625     High  
cufflinks 25.064     High Low
cufflinks 82.016     High  
cufflinks 105.298     High  
cufflinks 109.839     High  
cufflinks 26.166     High Low
cufflinks 101.754     High  
cufflinks 69.669     High  
cufflinks 123.079     High  
cufflinks 60.79     High  
cufflinks 111.128     High  
cufflinks 64.975     High  
cufflinks 34.042     High Low
cufflinks 501.663     High High
cufflinks 91.139     High  
cufflinks 41.313     High  
cufflinks 56.693     High  
cufflinks 65.514     High  
cufflinks 196.577     High High
cufflinks 34.731     High Low

0 Strain