Gene : Seita.3G023700 S. italica v2.2
Defline:  (1 of 1) PTHR13026 - NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 Genomic Order:  237
Name:  ? Seita.3G023700 Secondary Identifier:  ? PAC:32713820
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G023700 0.5kb upstream 0.5kb upstream 2455 true scaffold_3: 1432714-1435168 Setaria italica
Seita.3G023700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1434669-1435168 Setaria italica
Seita.3G023700 0.5kb downstream 0.5kb downstream 2455 true scaffold_3: 1432214-1434668 Setaria italica
Seita.3G023700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1432214-1432713 Setaria italica
Seita.3G023700 1.0kb upstream 1.0kb upstream 2955 true scaffold_3: 1432714-1435668 Setaria italica
Seita.3G023700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1434669-1435668 Setaria italica
Seita.3G023700 1.0kb downstream 1.0kb downstream 2955 true scaffold_3: 1431714-1434668 Setaria italica
Seita.3G023700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1431714-1432713 Setaria italica
Seita.3G023700 2.0kb upstream 2.0kb upstream 3955 true scaffold_3: 1432714-1436668 Setaria italica
Seita.3G023700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1434669-1436668 Setaria italica
Seita.3G023700 2.0kb downstream 2.0kb downstream 3955 true scaffold_3: 1430714-1434668 Setaria italica
Seita.3G023700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1430714-1432713 Setaria italica
Seita.3G023700 5.0kb upstream 5.0kb upstream 6955 true scaffold_3: 1432714-1439668 Setaria italica
Seita.3G023700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1434669-1439668 Setaria italica
Seita.3G023700 5.0kb downstream 5.0kb downstream 6955 true scaffold_3: 1427714-1434668 Setaria italica
Seita.3G023700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1427714-1432713 Setaria italica
Seita.3G023700 10.0kb upstream 10.0kb upstream 11955 true scaffold_3: 1432714-1444668 Setaria italica
Seita.3G023700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1434669-1444668 Setaria italica
Seita.3G023700 10.0kb downstream 10.0kb downstream 11955 true scaffold_3: 1422714-1434668 Setaria italica
Seita.3G023700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1422714-1432713 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041241 5273 Angiosperm View MSA
122183527 5267 Panicoideae View MSA
124572220 5269 Grass View MSA
121344172 5274 Embryophyte View MSA
123424078 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.096     High  
cufflinks 35.312     High High
cufflinks 17.724     High  
cufflinks 13.742     High Low
cufflinks 15.848     High  
cufflinks 37.086     High High
cufflinks 24.476     High  
cufflinks 24.551     High  
cufflinks 22.688     High  
cufflinks 14.803       Low
cufflinks 27.791     High  
cufflinks 29.941     High  
cufflinks 12.953       Low
cufflinks 16.187     High  
cufflinks 31.796     High High
cufflinks 13.742     High Low
cufflinks 31.209     High High
cufflinks 17.907     High  
cufflinks 14.456     High Low
cufflinks 29.159     High  

0 Strain