Gene : Seita.3G024200 S. italica v2.2
Defline:  (1 of 1) PTHR13096 - MINA53 MYC INDUCED NUCLEAR ANTIGEN Genomic Order:  242
Name:  ? Seita.3G024200 Secondary Identifier:  ? PAC:32712243
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G024200 0.5kb upstream 0.5kb upstream 4238 true scaffold_3: 1460150-1464387 Setaria italica
Seita.3G024200 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1463888-1464387 Setaria italica
Seita.3G024200 0.5kb downstream 0.5kb downstream 4238 true scaffold_3: 1459650-1463887 Setaria italica
Seita.3G024200 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1459650-1460149 Setaria italica
Seita.3G024200 1.0kb upstream 1.0kb upstream 4738 true scaffold_3: 1460150-1464887 Setaria italica
Seita.3G024200 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1463888-1464887 Setaria italica
Seita.3G024200 1.0kb downstream 1.0kb downstream 4738 true scaffold_3: 1459150-1463887 Setaria italica
Seita.3G024200 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1459150-1460149 Setaria italica
Seita.3G024200 2.0kb upstream 2.0kb upstream 5738 true scaffold_3: 1460150-1465887 Setaria italica
Seita.3G024200 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1463888-1465887 Setaria italica
Seita.3G024200 2.0kb downstream 2.0kb downstream 5738 true scaffold_3: 1458150-1463887 Setaria italica
Seita.3G024200 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1458150-1460149 Setaria italica
Seita.3G024200 5.0kb upstream 5.0kb upstream 8738 true scaffold_3: 1460150-1468887 Setaria italica
Seita.3G024200 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1463888-1468887 Setaria italica
Seita.3G024200 5.0kb downstream 5.0kb downstream 8738 true scaffold_3: 1455150-1463887 Setaria italica
Seita.3G024200 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1455150-1460149 Setaria italica
Seita.3G024200 10.0kb upstream 10.0kb upstream 13738 true scaffold_3: 1460150-1473887 Setaria italica
Seita.3G024200 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1463888-1473887 Setaria italica
Seita.3G024200 10.0kb downstream 10.0kb downstream 13738 true scaffold_3: 1450150-1463887 Setaria italica
Seita.3G024200 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1450150-1460149 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180220 5267 Panicoideae View MSA
124588284 5269 Grass View MSA
122049109 5273 Angiosperm View MSA
121348798 5274 Embryophyte View MSA
123428618 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.152        
cufflinks 3.512       High
cufflinks 0.999       Low
cufflinks 0.603       Low
cufflinks 1.592        
cufflinks 3.36        
cufflinks 2.063        
cufflinks 2.127        
cufflinks 2.165        
cufflinks 2.706        
cufflinks 2.525        
cufflinks 3.183        
cufflinks 2.373        
cufflinks 0.847       Low
cufflinks 2.884        
cufflinks 2.613        
cufflinks 3.0        
cufflinks 2.723        
cufflinks 0.913       Low
cufflinks 2.079        

0 Strain