Gene : Seita.3G025700 S. italica v2.2
Genomic Order:  257 Name:  ? Seita.3G025700
Secondary Identifier:  ? PAC:32712520
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G025700 0.5kb upstream 0.5kb upstream 6502 true scaffold_3: 1552527-1559028 Setaria italica
Seita.3G025700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1558529-1559028 Setaria italica
Seita.3G025700 0.5kb downstream 0.5kb downstream 6502 true scaffold_3: 1552027-1558528 Setaria italica
Seita.3G025700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1552027-1552526 Setaria italica
Seita.3G025700 1.0kb upstream 1.0kb upstream 7002 true scaffold_3: 1552527-1559528 Setaria italica
Seita.3G025700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1558529-1559528 Setaria italica
Seita.3G025700 1.0kb downstream 1.0kb downstream 7002 true scaffold_3: 1551527-1558528 Setaria italica
Seita.3G025700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1551527-1552526 Setaria italica
Seita.3G025700 2.0kb upstream 2.0kb upstream 8002 true scaffold_3: 1552527-1560528 Setaria italica
Seita.3G025700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1558529-1560528 Setaria italica
Seita.3G025700 2.0kb downstream 2.0kb downstream 8002 true scaffold_3: 1550527-1558528 Setaria italica
Seita.3G025700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1550527-1552526 Setaria italica
Seita.3G025700 5.0kb upstream 5.0kb upstream 11002 true scaffold_3: 1552527-1563528 Setaria italica
Seita.3G025700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1558529-1563528 Setaria italica
Seita.3G025700 5.0kb downstream 5.0kb downstream 11002 true scaffold_3: 1547527-1558528 Setaria italica
Seita.3G025700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1547527-1552526 Setaria italica
Seita.3G025700 10.0kb upstream 10.0kb upstream 16002 true scaffold_3: 1552527-1568528 Setaria italica
Seita.3G025700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1558529-1568528 Setaria italica
Seita.3G025700 10.0kb downstream 10.0kb downstream 16002 true scaffold_3: 1542527-1558528 Setaria italica
Seita.3G025700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1542527-1552526 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197063 5267 Panicoideae View MSA
124570725 5269 Grass View MSA
122047224 5273 Angiosperm View MSA
121350831 5274 Embryophyte View MSA
123381898 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.823        
cufflinks 1.401        
cufflinks 0.751       Low
cufflinks 0.784       Low
cufflinks 0.92       Low
cufflinks 1.48        
cufflinks 1.427        
cufflinks 2.168        
cufflinks 1.813        
cufflinks 2.903       High
cufflinks 1.73        
cufflinks 2.171        
cufflinks 1.312        
cufflinks 1.283        
cufflinks 1.946        
cufflinks 0.831       Low
cufflinks 2.895       High
cufflinks 1.107        
cufflinks 1.106        
cufflinks 2.367       High

0 Strain