Gene : Seita.3G025300 S. italica v2.2
Defline:  (1 of 1) PTHR31682:SF4 - UDP-ARABINOPYRANOSE MUTASE 5-RELATED Genomic Order:  253
Name:  ? Seita.3G025300 Secondary Identifier:  ? PAC:32714562
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G025300 0.5kb upstream 0.5kb upstream 1780 true scaffold_3: 1523750-1525529 Setaria italica
Seita.3G025300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1523750-1524249 Setaria italica
Seita.3G025300 0.5kb downstream 0.5kb downstream 1780 true scaffold_3: 1524250-1526029 Setaria italica
Seita.3G025300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1525530-1526029 Setaria italica
Seita.3G025300 1.0kb upstream 1.0kb upstream 2280 true scaffold_3: 1523250-1525529 Setaria italica
Seita.3G025300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1523250-1524249 Setaria italica
Seita.3G025300 1.0kb downstream 1.0kb downstream 2280 true scaffold_3: 1524250-1526529 Setaria italica
Seita.3G025300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1525530-1526529 Setaria italica
Seita.3G025300 2.0kb upstream 2.0kb upstream 3280 true scaffold_3: 1522250-1525529 Setaria italica
Seita.3G025300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1522250-1524249 Setaria italica
Seita.3G025300 2.0kb downstream 2.0kb downstream 3280 true scaffold_3: 1524250-1527529 Setaria italica
Seita.3G025300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1525530-1527529 Setaria italica
Seita.3G025300 5.0kb upstream 5.0kb upstream 6280 true scaffold_3: 1519250-1525529 Setaria italica
Seita.3G025300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1519250-1524249 Setaria italica
Seita.3G025300 5.0kb downstream 5.0kb downstream 6280 true scaffold_3: 1524250-1530529 Setaria italica
Seita.3G025300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1525530-1530529 Setaria italica
Seita.3G025300 10.0kb upstream 10.0kb upstream 11280 true scaffold_3: 1514250-1525529 Setaria italica
Seita.3G025300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1514250-1524249 Setaria italica
Seita.3G025300 10.0kb downstream 10.0kb downstream 11280 true scaffold_3: 1524250-1535529 Setaria italica
Seita.3G025300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1525530-1535529 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196185 5267 Panicoideae View MSA
124573603 5269 Grass View MSA
122046007 5273 Angiosperm View MSA
121310537 5274 Embryophyte View MSA
123347996 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 188.866     High  
cufflinks 147.246     High  
cufflinks 65.688     High Low
cufflinks 63.51     High Low
cufflinks 56.547     High Low
cufflinks 120.578     High  
cufflinks 120.974     High  
cufflinks 125.164     High  
cufflinks 81.863     High  
cufflinks 202.666     High High
cufflinks 186.51     High  
cufflinks 206.185     High High
cufflinks 154.178     High  
cufflinks 61.995     High Low
cufflinks 180.867     High  
cufflinks 102.8     High  
cufflinks 215.165     High High
cufflinks 109.3     High  
cufflinks 72.016     High Low
cufflinks 215.989     High High

0 Strain