Gene : Seita.3G032900 S. italica v2.2
Defline:  (1 of 1) PTHR12419:SF7 - OTU DOMAIN-CONTAINING PROTEIN 3 Genomic Order:  329
Name:  ? Seita.3G032900 Secondary Identifier:  ? PAC:32709981
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G032900 0.5kb upstream 0.5kb upstream 4599 true scaffold_3: 1991572-1996170 Setaria italica
Seita.3G032900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1995671-1996170 Setaria italica
Seita.3G032900 0.5kb downstream 0.5kb downstream 4599 true scaffold_3: 1991072-1995670 Setaria italica
Seita.3G032900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1991072-1991571 Setaria italica
Seita.3G032900 1.0kb upstream 1.0kb upstream 5099 true scaffold_3: 1991572-1996670 Setaria italica
Seita.3G032900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1995671-1996670 Setaria italica
Seita.3G032900 1.0kb downstream 1.0kb downstream 5099 true scaffold_3: 1990572-1995670 Setaria italica
Seita.3G032900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1990572-1991571 Setaria italica
Seita.3G032900 2.0kb upstream 2.0kb upstream 6099 true scaffold_3: 1991572-1997670 Setaria italica
Seita.3G032900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1995671-1997670 Setaria italica
Seita.3G032900 2.0kb downstream 2.0kb downstream 6099 true scaffold_3: 1989572-1995670 Setaria italica
Seita.3G032900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1989572-1991571 Setaria italica
Seita.3G032900 5.0kb upstream 5.0kb upstream 9099 true scaffold_3: 1991572-2000670 Setaria italica
Seita.3G032900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1995671-2000670 Setaria italica
Seita.3G032900 5.0kb downstream 5.0kb downstream 9099 true scaffold_3: 1986572-1995670 Setaria italica
Seita.3G032900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1986572-1991571 Setaria italica
Seita.3G032900 10.0kb upstream 10.0kb upstream 14099 true scaffold_3: 1991572-2005670 Setaria italica
Seita.3G032900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1995671-2005670 Setaria italica
Seita.3G032900 10.0kb downstream 10.0kb downstream 14099 true scaffold_3: 1981572-1995670 Setaria italica
Seita.3G032900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1981572-1991571 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177594 5267 Panicoideae View MSA
124574660 5269 Grass View MSA
122041608 5273 Angiosperm View MSA
121347051 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.194        
cufflinks 0.23       High
cufflinks 0.122       Low
cufflinks 0.122       Low
cufflinks 0.086       Low
cufflinks 0.23       High
cufflinks 0.131        
cufflinks 0.215       High
cufflinks 0.133        
cufflinks 0.129     Low  
cufflinks 0.177        
cufflinks 0.159        
cufflinks 0.158     Low  
cufflinks 0.171        
cufflinks 0.188        
cufflinks 0.161        
cufflinks 0.176        
cufflinks 0.199        
cufflinks 0.112       Low
cufflinks 0.174        

0 Strain