Gene : Seita.3G034100 S. italica v2.2
Defline:  (1 of 1) PTHR12668:SF5 - UPF0136 MEMBRANE PROTEIN YJR085C Genomic Order:  341
Name:  ? Seita.3G034100 Secondary Identifier:  ? PAC:32710871
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G034100 0.5kb upstream 0.5kb upstream 3300 true scaffold_3: 2055842-2059141 Setaria italica
Seita.3G034100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2055842-2056341 Setaria italica
Seita.3G034100 0.5kb downstream 0.5kb downstream 3300 true scaffold_3: 2056342-2059641 Setaria italica
Seita.3G034100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2059142-2059641 Setaria italica
Seita.3G034100 1.0kb upstream 1.0kb upstream 3800 true scaffold_3: 2055342-2059141 Setaria italica
Seita.3G034100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2055342-2056341 Setaria italica
Seita.3G034100 1.0kb downstream 1.0kb downstream 3800 true scaffold_3: 2056342-2060141 Setaria italica
Seita.3G034100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2059142-2060141 Setaria italica
Seita.3G034100 2.0kb upstream 2.0kb upstream 4800 true scaffold_3: 2054342-2059141 Setaria italica
Seita.3G034100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2054342-2056341 Setaria italica
Seita.3G034100 2.0kb downstream 2.0kb downstream 4800 true scaffold_3: 2056342-2061141 Setaria italica
Seita.3G034100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2059142-2061141 Setaria italica
Seita.3G034100 5.0kb upstream 5.0kb upstream 7800 true scaffold_3: 2051342-2059141 Setaria italica
Seita.3G034100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2051342-2056341 Setaria italica
Seita.3G034100 5.0kb downstream 5.0kb downstream 7800 true scaffold_3: 2056342-2064141 Setaria italica
Seita.3G034100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2059142-2064141 Setaria italica
Seita.3G034100 10.0kb upstream 10.0kb upstream 12800 true scaffold_3: 2046342-2059141 Setaria italica
Seita.3G034100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2046342-2056341 Setaria italica
Seita.3G034100 10.0kb downstream 10.0kb downstream 12800 true scaffold_3: 2056342-2069141 Setaria italica
Seita.3G034100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2059142-2069141 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180053 5267 Panicoideae View MSA
124570225 5269 Grass View MSA
122047216 5273 Angiosperm View MSA
121351322 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.702     High  
cufflinks 19.716     High  
cufflinks 10.977     High  
cufflinks 8.814       Low
cufflinks 10.339        
cufflinks 18.229     High  
cufflinks 18.0     High  
cufflinks 27.881     High High
cufflinks 17.466     High  
cufflinks 31.166     High High
cufflinks 16.166     High  
cufflinks 10.188        
cufflinks 11.953        
cufflinks 17.446     High  
cufflinks 15.739     High  
cufflinks 9.493       Low
cufflinks 17.634     High  
cufflinks 5.361       Low
cufflinks 12.608     High  
cufflinks 16.568     High  

0 Strain