Gene : Seita.3G041800 S. italica v2.2
Defline:  (1 of 2) PF00122//PF00689//PF00690//PF12710 - E1-E2 ATPase (E1-E2_ATPase) // Cation transporting ATPase, C-terminus (Cation_ATPase_C) // Cation transporter/ATPase, N-terminus (Cation_ATPase_N) // haloacid dehalogenase-like hydrolase (HAD) Genomic Order:  418
Name:  ? Seita.3G041800 Secondary Identifier:  ? PAC:32711498
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G041800 0.5kb upstream 0.5kb upstream 6409 true scaffold_3: 2534818-2541226 Setaria italica
Seita.3G041800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2540727-2541226 Setaria italica
Seita.3G041800 0.5kb downstream 0.5kb downstream 6409 true scaffold_3: 2534318-2540726 Setaria italica
Seita.3G041800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2534318-2534817 Setaria italica
Seita.3G041800 1.0kb upstream 1.0kb upstream 6909 true scaffold_3: 2534818-2541726 Setaria italica
Seita.3G041800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2540727-2541726 Setaria italica
Seita.3G041800 1.0kb downstream 1.0kb downstream 6909 true scaffold_3: 2533818-2540726 Setaria italica
Seita.3G041800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2533818-2534817 Setaria italica
Seita.3G041800 2.0kb upstream 2.0kb upstream 7909 true scaffold_3: 2534818-2542726 Setaria italica
Seita.3G041800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2540727-2542726 Setaria italica
Seita.3G041800 2.0kb downstream 2.0kb downstream 7909 true scaffold_3: 2532818-2540726 Setaria italica
Seita.3G041800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2532818-2534817 Setaria italica
Seita.3G041800 5.0kb upstream 5.0kb upstream 10909 true scaffold_3: 2534818-2545726 Setaria italica
Seita.3G041800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2540727-2545726 Setaria italica
Seita.3G041800 5.0kb downstream 5.0kb downstream 10909 true scaffold_3: 2529818-2540726 Setaria italica
Seita.3G041800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2529818-2534817 Setaria italica
Seita.3G041800 10.0kb upstream 10.0kb upstream 15909 true scaffold_3: 2534818-2550726 Setaria italica
Seita.3G041800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2540727-2550726 Setaria italica
Seita.3G041800 10.0kb downstream 10.0kb downstream 15909 true scaffold_3: 2524818-2540726 Setaria italica
Seita.3G041800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2524818-2534817 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175793 5267 Panicoideae View MSA
124581961 5269 Grass View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.43     High  
cufflinks 22.362     High  
cufflinks 6.783       Low
cufflinks 8.938       Low
cufflinks 13.583     High  
cufflinks 20.899     High  
cufflinks 15.136     High  
cufflinks 7.856       Low
cufflinks 16.44     High  
cufflinks 19.15     High  
cufflinks 24.21     High  
cufflinks 41.439     High High
cufflinks 18.701     High  
cufflinks 14.395     High  
cufflinks 40.41     High High
cufflinks 8.617       Low
cufflinks 19.331     High  
cufflinks 29.776     High High
cufflinks 14.9     High  
cufflinks 32.306     High High

0 Strain