Gene : Seita.3G045100 S. italica v2.2
Defline:  (1 of 1) PTHR11254//PTHR11254:SF327 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  451
Name:  ? Seita.3G045100 Secondary Identifier:  ? PAC:32712441
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G045100 0.5kb upstream 0.5kb upstream 5671 true scaffold_3: 2761951-2767621 Setaria italica
Seita.3G045100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2761951-2762450 Setaria italica
Seita.3G045100 0.5kb downstream 0.5kb downstream 5671 true scaffold_3: 2762451-2768121 Setaria italica
Seita.3G045100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2767622-2768121 Setaria italica
Seita.3G045100 1.0kb upstream 1.0kb upstream 6171 true scaffold_3: 2761451-2767621 Setaria italica
Seita.3G045100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2761451-2762450 Setaria italica
Seita.3G045100 1.0kb downstream 1.0kb downstream 6171 true scaffold_3: 2762451-2768621 Setaria italica
Seita.3G045100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2767622-2768621 Setaria italica
Seita.3G045100 2.0kb upstream 2.0kb upstream 7171 true scaffold_3: 2760451-2767621 Setaria italica
Seita.3G045100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2760451-2762450 Setaria italica
Seita.3G045100 2.0kb downstream 2.0kb downstream 7171 true scaffold_3: 2762451-2769621 Setaria italica
Seita.3G045100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2767622-2769621 Setaria italica
Seita.3G045100 5.0kb upstream 5.0kb upstream 10171 true scaffold_3: 2757451-2767621 Setaria italica
Seita.3G045100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2757451-2762450 Setaria italica
Seita.3G045100 5.0kb downstream 5.0kb downstream 10171 true scaffold_3: 2762451-2772621 Setaria italica
Seita.3G045100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2767622-2772621 Setaria italica
Seita.3G045100 10.0kb upstream 10.0kb upstream 15171 true scaffold_3: 2752451-2767621 Setaria italica
Seita.3G045100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2752451-2762450 Setaria italica
Seita.3G045100 10.0kb downstream 10.0kb downstream 15171 true scaffold_3: 2762451-2777621 Setaria italica
Seita.3G045100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2767622-2777621 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188896 5267 Panicoideae View MSA
124574381 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.244        
cufflinks 1.561       High
cufflinks 0.011     Low Low
cufflinks 0.01     Low Low
cufflinks 0.025     Low Low
cufflinks 0.949       High
cufflinks 0.138        
cufflinks 0.211        
cufflinks 0.074     Low  
cufflinks 0.275     Low  
cufflinks 0.469        
cufflinks 0.639        
cufflinks 0.298        
cufflinks 0.02     Low Low
cufflinks 0.347        
cufflinks 0.279        
cufflinks 0.378        
cufflinks 3.402       High
cufflinks 0.015     Low Low
cufflinks 0.365        

0 Strain