Gene : Seita.3G046400 S. italica v2.2
Defline:  (1 of 2) KOG4760 - Uncharacterized conserved protein Genomic Order:  464
Name:  ? Seita.3G046400 Secondary Identifier:  ? PAC:32714529
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G046400 0.5kb upstream 0.5kb upstream 3296 true scaffold_3: 2843621-2846916 Setaria italica
Seita.3G046400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2846417-2846916 Setaria italica
Seita.3G046400 0.5kb downstream 0.5kb downstream 3296 true scaffold_3: 2843121-2846416 Setaria italica
Seita.3G046400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2843121-2843620 Setaria italica
Seita.3G046400 1.0kb upstream 1.0kb upstream 3796 true scaffold_3: 2843621-2847416 Setaria italica
Seita.3G046400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2846417-2847416 Setaria italica
Seita.3G046400 1.0kb downstream 1.0kb downstream 3796 true scaffold_3: 2842621-2846416 Setaria italica
Seita.3G046400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2842621-2843620 Setaria italica
Seita.3G046400 2.0kb upstream 2.0kb upstream 4796 true scaffold_3: 2843621-2848416 Setaria italica
Seita.3G046400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2846417-2848416 Setaria italica
Seita.3G046400 2.0kb downstream 2.0kb downstream 4796 true scaffold_3: 2841621-2846416 Setaria italica
Seita.3G046400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2841621-2843620 Setaria italica
Seita.3G046400 5.0kb upstream 5.0kb upstream 7796 true scaffold_3: 2843621-2851416 Setaria italica
Seita.3G046400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2846417-2851416 Setaria italica
Seita.3G046400 5.0kb downstream 5.0kb downstream 7796 true scaffold_3: 2838621-2846416 Setaria italica
Seita.3G046400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2838621-2843620 Setaria italica
Seita.3G046400 10.0kb upstream 10.0kb upstream 12796 true scaffold_3: 2843621-2856416 Setaria italica
Seita.3G046400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2846417-2856416 Setaria italica
Seita.3G046400 10.0kb downstream 10.0kb downstream 12796 true scaffold_3: 2833621-2846416 Setaria italica
Seita.3G046400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2833621-2843620 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040903 5273 Angiosperm View MSA
122189504 5267 Panicoideae View MSA
124576836 5269 Grass View MSA
121344438 5274 Embryophyte View MSA
123426878 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.143        
cufflinks 1.476        
cufflinks 4.364       High
cufflinks 3.889       High
cufflinks 3.8       High
cufflinks 1.927        
cufflinks 2.114        
cufflinks 4.969       High
cufflinks 3.386       High
cufflinks 0.897       Low
cufflinks 1.152        
cufflinks 1.22        
cufflinks 1.387        
cufflinks 3.606       High
cufflinks 1.065       Low
cufflinks 1.908        
cufflinks 1.578        
cufflinks 1.304        
cufflinks 2.072        
cufflinks 1.276        

0 Strain