Gene : Seita.3G047800 S. italica v2.2
Defline:  (1 of 1) PTHR10909:SF332 - ISOVALERYL-COA DEHYDROGENASE, MITOCHONDRIAL Genomic Order:  478
Name:  ? Seita.3G047800 Secondary Identifier:  ? PAC:32714066
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LEU-DEG2-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G047800 0.5kb upstream 0.5kb upstream 3899 true scaffold_3: 2925822-2929720 Setaria italica
Seita.3G047800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2929221-2929720 Setaria italica
Seita.3G047800 0.5kb downstream 0.5kb downstream 3899 true scaffold_3: 2925322-2929220 Setaria italica
Seita.3G047800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2925322-2925821 Setaria italica
Seita.3G047800 1.0kb upstream 1.0kb upstream 4399 true scaffold_3: 2925822-2930220 Setaria italica
Seita.3G047800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2929221-2930220 Setaria italica
Seita.3G047800 1.0kb downstream 1.0kb downstream 4399 true scaffold_3: 2924822-2929220 Setaria italica
Seita.3G047800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2924822-2925821 Setaria italica
Seita.3G047800 2.0kb upstream 2.0kb upstream 5399 true scaffold_3: 2925822-2931220 Setaria italica
Seita.3G047800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2929221-2931220 Setaria italica
Seita.3G047800 2.0kb downstream 2.0kb downstream 5399 true scaffold_3: 2923822-2929220 Setaria italica
Seita.3G047800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2923822-2925821 Setaria italica
Seita.3G047800 5.0kb upstream 5.0kb upstream 8399 true scaffold_3: 2925822-2934220 Setaria italica
Seita.3G047800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2929221-2934220 Setaria italica
Seita.3G047800 5.0kb downstream 5.0kb downstream 8399 true scaffold_3: 2920822-2929220 Setaria italica
Seita.3G047800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2920822-2925821 Setaria italica
Seita.3G047800 10.0kb upstream 10.0kb upstream 13399 true scaffold_3: 2925822-2939220 Setaria italica
Seita.3G047800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2929221-2939220 Setaria italica
Seita.3G047800 10.0kb downstream 10.0kb downstream 13399 true scaffold_3: 2915822-2929220 Setaria italica
Seita.3G047800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2915822-2925821 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195761 5267 Panicoideae View MSA
124569191 5269 Grass View MSA
122042062 5273 Angiosperm View MSA
121346887 5274 Embryophyte View MSA
123427095 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 82.136     High  
cufflinks 13.197     High Low
cufflinks 66.584     High  
cufflinks 106.555     High  
cufflinks 106.845     High  
cufflinks 13.383     High Low
cufflinks 14.983     High Low
cufflinks 47.344     High  
cufflinks 60.35     High  
cufflinks 83.001     High  
cufflinks 66.87     High  
cufflinks 97.548     High  
cufflinks 106.699     High  
cufflinks 45.113     High  
cufflinks 15.479     High Low
cufflinks 47.433     High  
cufflinks 61.143     High  
cufflinks 264.318     High High
cufflinks 67.317     High  
cufflinks 16.165     High Low

0 Strain