Gene : Seita.3G052300 S. italica v2.2
Defline:  (1 of 1) PTHR14732:SF0 - RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED Genomic Order:  523
Name:  ? Seita.3G052300 Secondary Identifier:  ? PAC:32712470
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G052300 0.5kb upstream 0.5kb upstream 4473 true scaffold_3: 3303295-3307767 Setaria italica
Seita.3G052300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3307268-3307767 Setaria italica
Seita.3G052300 0.5kb downstream 0.5kb downstream 4473 true scaffold_3: 3302795-3307267 Setaria italica
Seita.3G052300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3302795-3303294 Setaria italica
Seita.3G052300 1.0kb upstream 1.0kb upstream 4973 true scaffold_3: 3303295-3308267 Setaria italica
Seita.3G052300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3307268-3308267 Setaria italica
Seita.3G052300 1.0kb downstream 1.0kb downstream 4973 true scaffold_3: 3302295-3307267 Setaria italica
Seita.3G052300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3302295-3303294 Setaria italica
Seita.3G052300 2.0kb upstream 2.0kb upstream 5973 true scaffold_3: 3303295-3309267 Setaria italica
Seita.3G052300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3307268-3309267 Setaria italica
Seita.3G052300 2.0kb downstream 2.0kb downstream 5973 true scaffold_3: 3301295-3307267 Setaria italica
Seita.3G052300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3301295-3303294 Setaria italica
Seita.3G052300 5.0kb upstream 5.0kb upstream 8973 true scaffold_3: 3303295-3312267 Setaria italica
Seita.3G052300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3307268-3312267 Setaria italica
Seita.3G052300 5.0kb downstream 5.0kb downstream 8973 true scaffold_3: 3298295-3307267 Setaria italica
Seita.3G052300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3298295-3303294 Setaria italica
Seita.3G052300 10.0kb upstream 10.0kb upstream 13973 true scaffold_3: 3303295-3317267 Setaria italica
Seita.3G052300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3307268-3317267 Setaria italica
Seita.3G052300 10.0kb downstream 10.0kb downstream 13973 true scaffold_3: 3293295-3307267 Setaria italica
Seita.3G052300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3293295-3303294 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175553 5267 Panicoideae View MSA
124572985 5269 Grass View MSA
122046248 5273 Angiosperm View MSA
121347996 5274 Embryophyte View MSA
123426503 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.188        
cufflinks 10.589        
cufflinks 6.95        
cufflinks 7.258        
cufflinks 6.448        
cufflinks 8.796        
cufflinks 6.789        
cufflinks 4.761       Low
cufflinks 4.994       Low
cufflinks 7.499        
cufflinks 8.816        
cufflinks 11.312       High
cufflinks 7.47        
cufflinks 4.927       Low
cufflinks 8.861        
cufflinks 9.48        
cufflinks 7.667        
cufflinks 19.887     High High
cufflinks 6.203        
cufflinks 6.785        

0 Strain