Gene : Seita.3G138300 S. italica v2.2
Defline:  (1 of 3) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  1383
Name:  ? Seita.3G138300 Secondary Identifier:  ? PAC:32714131
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica BRANCHED-CHAIN-AA-SYN-PWY Setaria italica pathologic  
Sitalica ILEUSYN-PWY Setaria italica pathologic  
Sitalica PWY-3001 Setaria italica pathologic  
Sitalica VALSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G138300 0.5kb upstream 0.5kb upstream 4278 true scaffold_3: 9611541-9615818 Setaria italica
Seita.3G138300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9611541-9612040 Setaria italica
Seita.3G138300 0.5kb downstream 0.5kb downstream 4278 true scaffold_3: 9612041-9616318 Setaria italica
Seita.3G138300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9615819-9616318 Setaria italica
Seita.3G138300 1.0kb upstream 1.0kb upstream 4778 true scaffold_3: 9611041-9615818 Setaria italica
Seita.3G138300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9611041-9612040 Setaria italica
Seita.3G138300 1.0kb downstream 1.0kb downstream 4778 true scaffold_3: 9612041-9616818 Setaria italica
Seita.3G138300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9615819-9616818 Setaria italica
Seita.3G138300 2.0kb upstream 2.0kb upstream 5778 true scaffold_3: 9610041-9615818 Setaria italica
Seita.3G138300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9610041-9612040 Setaria italica
Seita.3G138300 2.0kb downstream 2.0kb downstream 5778 true scaffold_3: 9612041-9617818 Setaria italica
Seita.3G138300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9615819-9617818 Setaria italica
Seita.3G138300 5.0kb upstream 5.0kb upstream 8778 true scaffold_3: 9607041-9615818 Setaria italica
Seita.3G138300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9607041-9612040 Setaria italica
Seita.3G138300 5.0kb downstream 5.0kb downstream 8778 true scaffold_3: 9612041-9620818 Setaria italica
Seita.3G138300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9615819-9620818 Setaria italica
Seita.3G138300 10.0kb upstream 10.0kb upstream 13778 true scaffold_3: 9602041-9615818 Setaria italica
Seita.3G138300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9602041-9612040 Setaria italica
Seita.3G138300 10.0kb downstream 10.0kb downstream 13778 true scaffold_3: 9612041-9625818 Setaria italica
Seita.3G138300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9615819-9625818 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197042 5267 Panicoideae View MSA
124580502 5269 Grass View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 102.976     High  
cufflinks 70.855     High  
cufflinks 94.457     High  
cufflinks 120.209     High  
cufflinks 196.538     High High
cufflinks 63.115     High  
cufflinks 161.202     High High
cufflinks 113.137     High  
cufflinks 256.024     High High
cufflinks 81.316     High  
cufflinks 84.904     High  
cufflinks 54.131     High Low
cufflinks 45.769     High Low
cufflinks 73.866     High  
cufflinks 44.879     High Low
cufflinks 133.14     High  
cufflinks 71.746     High  
cufflinks 79.815     High  
cufflinks 69.856     High  
cufflinks 73.168     High  

0 Strain