Gene : Seita.3G135300 S. italica v2.2
Genomic Order:  1353 Name:  ? Seita.3G135300
Secondary Identifier:  ? PAC:32711375
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G135300 0.5kb upstream 0.5kb upstream 6541 true scaffold_3: 9402090-9408630 Setaria italica
Seita.3G135300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9402090-9402589 Setaria italica
Seita.3G135300 0.5kb downstream 0.5kb downstream 6541 true scaffold_3: 9402590-9409130 Setaria italica
Seita.3G135300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9408631-9409130 Setaria italica
Seita.3G135300 1.0kb upstream 1.0kb upstream 7041 true scaffold_3: 9401590-9408630 Setaria italica
Seita.3G135300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9401590-9402589 Setaria italica
Seita.3G135300 1.0kb downstream 1.0kb downstream 7041 true scaffold_3: 9402590-9409630 Setaria italica
Seita.3G135300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9408631-9409630 Setaria italica
Seita.3G135300 2.0kb upstream 2.0kb upstream 8041 true scaffold_3: 9400590-9408630 Setaria italica
Seita.3G135300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9400590-9402589 Setaria italica
Seita.3G135300 2.0kb downstream 2.0kb downstream 8041 true scaffold_3: 9402590-9410630 Setaria italica
Seita.3G135300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9408631-9410630 Setaria italica
Seita.3G135300 5.0kb upstream 5.0kb upstream 11041 true scaffold_3: 9397590-9408630 Setaria italica
Seita.3G135300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9397590-9402589 Setaria italica
Seita.3G135300 5.0kb downstream 5.0kb downstream 11041 true scaffold_3: 9402590-9413630 Setaria italica
Seita.3G135300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9408631-9413630 Setaria italica
Seita.3G135300 10.0kb upstream 10.0kb upstream 16041 true scaffold_3: 9392590-9408630 Setaria italica
Seita.3G135300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9392590-9402589 Setaria italica
Seita.3G135300 10.0kb downstream 10.0kb downstream 16041 true scaffold_3: 9402590-9418630 Setaria italica
Seita.3G135300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9408631-9418630 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178449 5267 Panicoideae View MSA
124580326 5269 Grass View MSA
122043431 5273 Angiosperm View MSA
121346376 5274 Embryophyte View MSA
123424198 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.101        
cufflinks 1.741        
cufflinks 2.509       High
cufflinks 2.238        
cufflinks 1.489        
cufflinks 1.983        
cufflinks 1.358       Low
cufflinks 1.427        
cufflinks 1.053       Low
cufflinks 1.123       Low
cufflinks 1.647        
cufflinks 2.285       High
cufflinks 1.387        
cufflinks 2.346       High
cufflinks 1.658        
cufflinks 1.984        
cufflinks 2.474       High
cufflinks 1.671        
cufflinks 2.166        
cufflinks 1.607        

0 Strain