Gene : Seita.3G136300 S. italica v2.2
Defline:  (1 of 2) PTHR31342:SF7 - PROTEIN CHUP1, CHLOROPLASTIC Genomic Order:  1363
Name:  ? Seita.3G136300 Secondary Identifier:  ? PAC:32714094
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G136300 0.5kb upstream 0.5kb upstream 6523 true scaffold_3: 9488152-9494674 Setaria italica
Seita.3G136300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9488152-9488651 Setaria italica
Seita.3G136300 0.5kb downstream 0.5kb downstream 6523 true scaffold_3: 9488652-9495174 Setaria italica
Seita.3G136300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9494675-9495174 Setaria italica
Seita.3G136300 1.0kb upstream 1.0kb upstream 7023 true scaffold_3: 9487652-9494674 Setaria italica
Seita.3G136300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9487652-9488651 Setaria italica
Seita.3G136300 1.0kb downstream 1.0kb downstream 7023 true scaffold_3: 9488652-9495674 Setaria italica
Seita.3G136300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9494675-9495674 Setaria italica
Seita.3G136300 2.0kb upstream 2.0kb upstream 8023 true scaffold_3: 9486652-9494674 Setaria italica
Seita.3G136300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9486652-9488651 Setaria italica
Seita.3G136300 2.0kb downstream 2.0kb downstream 8023 true scaffold_3: 9488652-9496674 Setaria italica
Seita.3G136300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9494675-9496674 Setaria italica
Seita.3G136300 5.0kb upstream 5.0kb upstream 11023 true scaffold_3: 9483652-9494674 Setaria italica
Seita.3G136300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9483652-9488651 Setaria italica
Seita.3G136300 5.0kb downstream 5.0kb downstream 11023 true scaffold_3: 9488652-9499674 Setaria italica
Seita.3G136300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9494675-9499674 Setaria italica
Seita.3G136300 10.0kb upstream 10.0kb upstream 16023 true scaffold_3: 9478652-9494674 Setaria italica
Seita.3G136300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9478652-9488651 Setaria italica
Seita.3G136300 10.0kb downstream 10.0kb downstream 16023 true scaffold_3: 9488652-9504674 Setaria italica
Seita.3G136300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9494675-9504674 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183962 5267 Panicoideae View MSA
124582095 5269 Grass View MSA
122047771 5273 Angiosperm View MSA
121348939 5274 Embryophyte View MSA
123381088 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.827        
cufflinks 6.025        
cufflinks 53.182     High High
cufflinks 41.914     High  
cufflinks 48.633     High  
cufflinks 5.163        
cufflinks 51.102     High  
cufflinks 16.318     High  
cufflinks 30.672     High  
cufflinks 0.664       Low
cufflinks 1.172        
cufflinks 0.496       Low
cufflinks 1.675        
cufflinks 26.149     High  
cufflinks 0.371       Low
cufflinks 96.96     High High
cufflinks 0.201       Low
cufflinks 28.174     High  
cufflinks 57.59     High High
cufflinks 0.317       Low

0 Strain