Gene : Seita.3G140800 S. italica v2.2
Defline:  (1 of 1) PF11341 - Protein of unknown function (DUF3143) (DUF3143) Genomic Order:  1408
Name:  ? Seita.3G140800 Secondary Identifier:  ? PAC:32710039
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G140800 0.5kb upstream 0.5kb upstream 1779 true scaffold_3: 9879160-9880938 Setaria italica
Seita.3G140800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9880439-9880938 Setaria italica
Seita.3G140800 0.5kb downstream 0.5kb downstream 1779 true scaffold_3: 9878660-9880438 Setaria italica
Seita.3G140800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9878660-9879159 Setaria italica
Seita.3G140800 1.0kb upstream 1.0kb upstream 2279 true scaffold_3: 9879160-9881438 Setaria italica
Seita.3G140800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9880439-9881438 Setaria italica
Seita.3G140800 1.0kb downstream 1.0kb downstream 2279 true scaffold_3: 9878160-9880438 Setaria italica
Seita.3G140800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9878160-9879159 Setaria italica
Seita.3G140800 2.0kb upstream 2.0kb upstream 3279 true scaffold_3: 9879160-9882438 Setaria italica
Seita.3G140800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9880439-9882438 Setaria italica
Seita.3G140800 2.0kb downstream 2.0kb downstream 3279 true scaffold_3: 9877160-9880438 Setaria italica
Seita.3G140800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9877160-9879159 Setaria italica
Seita.3G140800 5.0kb upstream 5.0kb upstream 6279 true scaffold_3: 9879160-9885438 Setaria italica
Seita.3G140800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9880439-9885438 Setaria italica
Seita.3G140800 5.0kb downstream 5.0kb downstream 6279 true scaffold_3: 9874160-9880438 Setaria italica
Seita.3G140800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9874160-9879159 Setaria italica
Seita.3G140800 10.0kb upstream 10.0kb upstream 11279 true scaffold_3: 9879160-9890438 Setaria italica
Seita.3G140800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9880439-9890438 Setaria italica
Seita.3G140800 10.0kb downstream 10.0kb downstream 11279 true scaffold_3: 9869160-9880438 Setaria italica
Seita.3G140800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9869160-9879159 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183518 5267 Panicoideae View MSA
124582930 5269 Grass View MSA
122044446 5273 Angiosperm View MSA
121347894 5274 Embryophyte View MSA
123380669 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.304        
cufflinks 4.038        
cufflinks 8.642        
cufflinks 11.393     High  
cufflinks 9.887        
cufflinks 3.799        
cufflinks 5.722        
cufflinks 15.865     High High
cufflinks 10.237        
cufflinks 17.291     High High
cufflinks 3.878        
cufflinks 4.665        
cufflinks 5.254        
cufflinks 10.574        
cufflinks 2.124       Low
cufflinks 10.824        
cufflinks 4.759        
cufflinks 7.658        
cufflinks 9.135        
cufflinks 2.914       Low

0 Strain