Gene : Seita.3G142800 S. italica v2.2
Defline:  (1 of 71) KOG0254 - Predicted transporter (major facilitator superfamily) Genomic Order:  1428
Name:  ? Seita.3G142800 Secondary Identifier:  ? PAC:32710075
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G142800 0.5kb upstream 0.5kb upstream 5340 true scaffold_3: 10039927-10045266 Setaria italica
Seita.3G142800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10044767-10045266 Setaria italica
Seita.3G142800 0.5kb downstream 0.5kb downstream 5340 true scaffold_3: 10039427-10044766 Setaria italica
Seita.3G142800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10039427-10039926 Setaria italica
Seita.3G142800 1.0kb upstream 1.0kb upstream 5840 true scaffold_3: 10039927-10045766 Setaria italica
Seita.3G142800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10044767-10045766 Setaria italica
Seita.3G142800 1.0kb downstream 1.0kb downstream 5840 true scaffold_3: 10038927-10044766 Setaria italica
Seita.3G142800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10038927-10039926 Setaria italica
Seita.3G142800 2.0kb upstream 2.0kb upstream 6840 true scaffold_3: 10039927-10046766 Setaria italica
Seita.3G142800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10044767-10046766 Setaria italica
Seita.3G142800 2.0kb downstream 2.0kb downstream 6840 true scaffold_3: 10037927-10044766 Setaria italica
Seita.3G142800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10037927-10039926 Setaria italica
Seita.3G142800 5.0kb upstream 5.0kb upstream 9840 true scaffold_3: 10039927-10049766 Setaria italica
Seita.3G142800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10044767-10049766 Setaria italica
Seita.3G142800 5.0kb downstream 5.0kb downstream 9840 true scaffold_3: 10034927-10044766 Setaria italica
Seita.3G142800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10034927-10039926 Setaria italica
Seita.3G142800 10.0kb upstream 10.0kb upstream 14840 true scaffold_3: 10039927-10054766 Setaria italica
Seita.3G142800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10044767-10054766 Setaria italica
Seita.3G142800 10.0kb downstream 10.0kb downstream 14840 true scaffold_3: 10029927-10044766 Setaria italica
Seita.3G142800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10029927-10039926 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176198 5267 Panicoideae View MSA
124583509 5269 Grass View MSA
122041971 5273 Angiosperm View MSA
123429172 5275 Viridiplantae View MSA
121350723 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.687     High  
cufflinks 6.758       Low
cufflinks 38.065     High High
cufflinks 44.096     High High
cufflinks 39.866     High High
cufflinks 8.759       Low
cufflinks 22.228     High  
cufflinks 19.923     High  
cufflinks 22.56     High  
cufflinks 18.712     High  
cufflinks 31.074     High  
cufflinks 15.721     High  
cufflinks 40.893     High High
cufflinks 18.08     High  
cufflinks 17.215     High  
cufflinks 17.493     High  
cufflinks 21.448     High  
cufflinks 16.41     High  
cufflinks 19.346     High  
cufflinks 24.086     High  

0 Strain